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Electrocardiogram classification using TSST-based spectrogram and ConViT
As an important auxiliary tool of arrhythmia diagnosis, Electrocardiogram (ECG) is frequently utilized to detect a variety of cardiovascular diseases caused by arrhythmia, such as cardiac mechanical infarction. In the past few years, the classification of ECG has always been a challenging problem. T...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9590285/ https://www.ncbi.nlm.nih.gov/pubmed/36299867 http://dx.doi.org/10.3389/fcvm.2022.983543 |
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author | Bing, Pingping Liu, Yang Liu, Wei Zhou, Jun Zhu, Lemei |
author_facet | Bing, Pingping Liu, Yang Liu, Wei Zhou, Jun Zhu, Lemei |
author_sort | Bing, Pingping |
collection | PubMed |
description | As an important auxiliary tool of arrhythmia diagnosis, Electrocardiogram (ECG) is frequently utilized to detect a variety of cardiovascular diseases caused by arrhythmia, such as cardiac mechanical infarction. In the past few years, the classification of ECG has always been a challenging problem. This paper presents a novel deep learning model called convolutional vision transformer (ConViT), which combines vision transformer (ViT) with convolutional neural network (CNN), for ECG arrhythmia classification, in which the unique soft convolutional inductive bias of gated positional self-attention (GPSA) layers integrates the superiorities of attention mechanism and convolutional architecture. Moreover, the time-reassigned synchrosqueezing transform (TSST), a newly developed time-frequency analysis (TFA) method where the time-frequency coefficients are reassigned in the time direction, is employed to sharpen pulse traits for feature extraction. Aiming at the class imbalance phenomena in the traditional ECG database, the smote algorithm and focal loss (FL) are used for data augmentation and minority-class weighting, respectively. The experiment using MIT-BIH arrhythmia database indicates that the overall accuracy of the proposed model is as high as 99.5%. Furthermore, the specificity (Spe), F1-Score and positive Matthews Correlation Coefficient (MCC) of supra ventricular ectopic beat (S) and ventricular ectopic beat (V) are all more than 94%. These results demonstrate that the proposed method is superior to most of the existing methods. |
format | Online Article Text |
id | pubmed-9590285 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95902852022-10-25 Electrocardiogram classification using TSST-based spectrogram and ConViT Bing, Pingping Liu, Yang Liu, Wei Zhou, Jun Zhu, Lemei Front Cardiovasc Med Cardiovascular Medicine As an important auxiliary tool of arrhythmia diagnosis, Electrocardiogram (ECG) is frequently utilized to detect a variety of cardiovascular diseases caused by arrhythmia, such as cardiac mechanical infarction. In the past few years, the classification of ECG has always been a challenging problem. This paper presents a novel deep learning model called convolutional vision transformer (ConViT), which combines vision transformer (ViT) with convolutional neural network (CNN), for ECG arrhythmia classification, in which the unique soft convolutional inductive bias of gated positional self-attention (GPSA) layers integrates the superiorities of attention mechanism and convolutional architecture. Moreover, the time-reassigned synchrosqueezing transform (TSST), a newly developed time-frequency analysis (TFA) method where the time-frequency coefficients are reassigned in the time direction, is employed to sharpen pulse traits for feature extraction. Aiming at the class imbalance phenomena in the traditional ECG database, the smote algorithm and focal loss (FL) are used for data augmentation and minority-class weighting, respectively. The experiment using MIT-BIH arrhythmia database indicates that the overall accuracy of the proposed model is as high as 99.5%. Furthermore, the specificity (Spe), F1-Score and positive Matthews Correlation Coefficient (MCC) of supra ventricular ectopic beat (S) and ventricular ectopic beat (V) are all more than 94%. These results demonstrate that the proposed method is superior to most of the existing methods. Frontiers Media S.A. 2022-10-10 /pmc/articles/PMC9590285/ /pubmed/36299867 http://dx.doi.org/10.3389/fcvm.2022.983543 Text en Copyright © 2022 Bing, Liu, Liu, Zhou and Zhu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Bing, Pingping Liu, Yang Liu, Wei Zhou, Jun Zhu, Lemei Electrocardiogram classification using TSST-based spectrogram and ConViT |
title | Electrocardiogram classification using TSST-based spectrogram and ConViT |
title_full | Electrocardiogram classification using TSST-based spectrogram and ConViT |
title_fullStr | Electrocardiogram classification using TSST-based spectrogram and ConViT |
title_full_unstemmed | Electrocardiogram classification using TSST-based spectrogram and ConViT |
title_short | Electrocardiogram classification using TSST-based spectrogram and ConViT |
title_sort | electrocardiogram classification using tsst-based spectrogram and convit |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9590285/ https://www.ncbi.nlm.nih.gov/pubmed/36299867 http://dx.doi.org/10.3389/fcvm.2022.983543 |
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