Cargando…
Elucidating Conformation and Hydrogen-Bonding Motifs of Reactive Thiourea Intermediates
[Image: see text] Substituted diphenylthioureas (DPTUs) are efficient hydrogen-bonding organo-catalysts, and substitution of DPTUs has been shown to greatly affect catalytic activity. Yet, both the conformation of DPTUs in solution and the conformation and hydrogen-bonded motifs within catalytically...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9594049/ https://www.ncbi.nlm.nih.gov/pubmed/36313523 http://dx.doi.org/10.1021/acscatal.2c03382 |
_version_ | 1784815316474265600 |
---|---|
author | Ehrhard, Amelie A. Gunkel, Lucas Jäger, Sebastian Sell, Arne C. Nagata, Yuki Hunger, Johannes |
author_facet | Ehrhard, Amelie A. Gunkel, Lucas Jäger, Sebastian Sell, Arne C. Nagata, Yuki Hunger, Johannes |
author_sort | Ehrhard, Amelie A. |
collection | PubMed |
description | [Image: see text] Substituted diphenylthioureas (DPTUs) are efficient hydrogen-bonding organo-catalysts, and substitution of DPTUs has been shown to greatly affect catalytic activity. Yet, both the conformation of DPTUs in solution and the conformation and hydrogen-bonded motifs within catalytically active intermediates, pertinent to their mode of activation, have remained elusive. By combining linear and ultrafast vibrational spectroscopy with spectroscopic simulations and calculations, we show that different conformational states of thioureas give rise to distinctively different N–H stretching bands in the infrared spectra. In the absence of hydrogen-bond-accepting substrates, we show that vibrational structure and dynamics are highly sensitive to the substitution of DPTUs with CF(3) groups and to the interaction with the solvent environment, allowing for disentangling the different conformational states. In contrast to bare diphenylthiourea (0CF-DPTU), we find the catalytically superior CF(3)-substituted DPTU (4CF-DPTU) to favor the trans–trans conformation in solution, allowing for donating two hydrogen bonds to the reactive substrate. In the presence of a prototypical substrate, DPTUs in trans–trans conformation hydrogen bond to the substrate’s C=O group, as evidenced by a red-shift of the N–H vibration. Yet, our time-resolved infrared experiments indicate that only one N–H group forms a strong hydrogen bond to the carbonyl moiety, while thiourea’s second N–H group only weakly interacts with the substrate. Our data indicate that hydrogen-bond exchange between these N–H groups occurs on the timescale of a few picoseconds for 0CF-DPTU and is significantly accelerated upon CF(3) substitution. Our results highlight the subtle interplay between conformational equilibria, bonding states, and bonding lifetimes in reactive intermediates in thiourea catalysis, which help rationalize their catalytic activity. |
format | Online Article Text |
id | pubmed-9594049 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-95940492022-10-26 Elucidating Conformation and Hydrogen-Bonding Motifs of Reactive Thiourea Intermediates Ehrhard, Amelie A. Gunkel, Lucas Jäger, Sebastian Sell, Arne C. Nagata, Yuki Hunger, Johannes ACS Catal [Image: see text] Substituted diphenylthioureas (DPTUs) are efficient hydrogen-bonding organo-catalysts, and substitution of DPTUs has been shown to greatly affect catalytic activity. Yet, both the conformation of DPTUs in solution and the conformation and hydrogen-bonded motifs within catalytically active intermediates, pertinent to their mode of activation, have remained elusive. By combining linear and ultrafast vibrational spectroscopy with spectroscopic simulations and calculations, we show that different conformational states of thioureas give rise to distinctively different N–H stretching bands in the infrared spectra. In the absence of hydrogen-bond-accepting substrates, we show that vibrational structure and dynamics are highly sensitive to the substitution of DPTUs with CF(3) groups and to the interaction with the solvent environment, allowing for disentangling the different conformational states. In contrast to bare diphenylthiourea (0CF-DPTU), we find the catalytically superior CF(3)-substituted DPTU (4CF-DPTU) to favor the trans–trans conformation in solution, allowing for donating two hydrogen bonds to the reactive substrate. In the presence of a prototypical substrate, DPTUs in trans–trans conformation hydrogen bond to the substrate’s C=O group, as evidenced by a red-shift of the N–H vibration. Yet, our time-resolved infrared experiments indicate that only one N–H group forms a strong hydrogen bond to the carbonyl moiety, while thiourea’s second N–H group only weakly interacts with the substrate. Our data indicate that hydrogen-bond exchange between these N–H groups occurs on the timescale of a few picoseconds for 0CF-DPTU and is significantly accelerated upon CF(3) substitution. Our results highlight the subtle interplay between conformational equilibria, bonding states, and bonding lifetimes in reactive intermediates in thiourea catalysis, which help rationalize their catalytic activity. American Chemical Society 2022-10-05 2022-10-21 /pmc/articles/PMC9594049/ /pubmed/36313523 http://dx.doi.org/10.1021/acscatal.2c03382 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Ehrhard, Amelie A. Gunkel, Lucas Jäger, Sebastian Sell, Arne C. Nagata, Yuki Hunger, Johannes Elucidating Conformation and Hydrogen-Bonding Motifs of Reactive Thiourea Intermediates |
title | Elucidating Conformation
and Hydrogen-Bonding Motifs
of Reactive Thiourea Intermediates |
title_full | Elucidating Conformation
and Hydrogen-Bonding Motifs
of Reactive Thiourea Intermediates |
title_fullStr | Elucidating Conformation
and Hydrogen-Bonding Motifs
of Reactive Thiourea Intermediates |
title_full_unstemmed | Elucidating Conformation
and Hydrogen-Bonding Motifs
of Reactive Thiourea Intermediates |
title_short | Elucidating Conformation
and Hydrogen-Bonding Motifs
of Reactive Thiourea Intermediates |
title_sort | elucidating conformation
and hydrogen-bonding motifs
of reactive thiourea intermediates |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9594049/ https://www.ncbi.nlm.nih.gov/pubmed/36313523 http://dx.doi.org/10.1021/acscatal.2c03382 |
work_keys_str_mv | AT ehrhardameliea elucidatingconformationandhydrogenbondingmotifsofreactivethioureaintermediates AT gunkellucas elucidatingconformationandhydrogenbondingmotifsofreactivethioureaintermediates AT jagersebastian elucidatingconformationandhydrogenbondingmotifsofreactivethioureaintermediates AT sellarnec elucidatingconformationandhydrogenbondingmotifsofreactivethioureaintermediates AT nagatayuki elucidatingconformationandhydrogenbondingmotifsofreactivethioureaintermediates AT hungerjohannes elucidatingconformationandhydrogenbondingmotifsofreactivethioureaintermediates |