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The potential key genes and pathways associated with Wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes

To designate the probable most important differentially expressed genes and genetic pathways in Wilms tumor and assess their expression and diagnostic potential by RT-PCR and statistical analysis. Systematic review of the literature and various bioinformatics analysis was carried out to gather and n...

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Autores principales: Bitaraf, Masoud, Mahmanzar, Mohammadamin, Zafari, Narges, Mohammadpour, Hadiseh, Vasei, Mohammad, Moradi Matin, Leyla, Kajbafzadeh, Abdol-Mohammad, Majidi Zolbin, Masoumeh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9596724/
https://www.ncbi.nlm.nih.gov/pubmed/36284226
http://dx.doi.org/10.1038/s41598-022-22925-3
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author Bitaraf, Masoud
Mahmanzar, Mohammadamin
Zafari, Narges
Mohammadpour, Hadiseh
Vasei, Mohammad
Moradi Matin, Leyla
Kajbafzadeh, Abdol-Mohammad
Majidi Zolbin, Masoumeh
author_facet Bitaraf, Masoud
Mahmanzar, Mohammadamin
Zafari, Narges
Mohammadpour, Hadiseh
Vasei, Mohammad
Moradi Matin, Leyla
Kajbafzadeh, Abdol-Mohammad
Majidi Zolbin, Masoumeh
author_sort Bitaraf, Masoud
collection PubMed
description To designate the probable most important differentially expressed genes and genetic pathways in Wilms tumor and assess their expression and diagnostic potential by RT-PCR and statistical analysis. Systematic review of the literature and various bioinformatics analysis was carried out to gather and narrow down data. The expression of end-resulting genes was compared in Wilms tumor and normal tissue samples using RT-PCR. Statistical tests reported the diagnostic accuracy of genes and their correlation with clinicopathological features. Four genes including CDH1, NCAM1, EGF, and IGF2 were designated. The panel combining them has 100% sensitivity and specificity in differentiating tumors from normal tissue. Eight pathways, most involved in cell–cell and cell-basal matrix junction interactions, were found to be associated with disease pathogenesis. The suggested genes should undergo further evaluation to be validated as diagnostic biomarkers. Further research on the eight proposed pathways is recommended.
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spelling pubmed-95967242022-10-27 The potential key genes and pathways associated with Wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes Bitaraf, Masoud Mahmanzar, Mohammadamin Zafari, Narges Mohammadpour, Hadiseh Vasei, Mohammad Moradi Matin, Leyla Kajbafzadeh, Abdol-Mohammad Majidi Zolbin, Masoumeh Sci Rep Article To designate the probable most important differentially expressed genes and genetic pathways in Wilms tumor and assess their expression and diagnostic potential by RT-PCR and statistical analysis. Systematic review of the literature and various bioinformatics analysis was carried out to gather and narrow down data. The expression of end-resulting genes was compared in Wilms tumor and normal tissue samples using RT-PCR. Statistical tests reported the diagnostic accuracy of genes and their correlation with clinicopathological features. Four genes including CDH1, NCAM1, EGF, and IGF2 were designated. The panel combining them has 100% sensitivity and specificity in differentiating tumors from normal tissue. Eight pathways, most involved in cell–cell and cell-basal matrix junction interactions, were found to be associated with disease pathogenesis. The suggested genes should undergo further evaluation to be validated as diagnostic biomarkers. Further research on the eight proposed pathways is recommended. Nature Publishing Group UK 2022-10-25 /pmc/articles/PMC9596724/ /pubmed/36284226 http://dx.doi.org/10.1038/s41598-022-22925-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Bitaraf, Masoud
Mahmanzar, Mohammadamin
Zafari, Narges
Mohammadpour, Hadiseh
Vasei, Mohammad
Moradi Matin, Leyla
Kajbafzadeh, Abdol-Mohammad
Majidi Zolbin, Masoumeh
The potential key genes and pathways associated with Wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes
title The potential key genes and pathways associated with Wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes
title_full The potential key genes and pathways associated with Wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes
title_fullStr The potential key genes and pathways associated with Wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes
title_full_unstemmed The potential key genes and pathways associated with Wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes
title_short The potential key genes and pathways associated with Wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes
title_sort potential key genes and pathways associated with wilms tumor in quest of proper candidates for diagnostic and therapeutic purposes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9596724/
https://www.ncbi.nlm.nih.gov/pubmed/36284226
http://dx.doi.org/10.1038/s41598-022-22925-3
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