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Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer
As the third most common cancer and the second leading cause of cancer death worldwide, colorectal cancer (CRC) poses a serious threat to people’s health. In recent years, circRNA has been widely reported as a new biomarker in CRC, but a comprehensive summary and analysis is lacking. This study aims...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9597305/ https://www.ncbi.nlm.nih.gov/pubmed/36313458 http://dx.doi.org/10.3389/fgene.2022.938672 |
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author | Xiao, Yafei Qiu, Mengyuan Tan, Cong Huang, Wanting Hu, Shaowen Jiang, Xiaowei Guo, Mingjie Wang, Congcong Liang, Jingyu Wu, Yimei Li, Mengmeng Li, Quanying Qin, Changjiang |
author_facet | Xiao, Yafei Qiu, Mengyuan Tan, Cong Huang, Wanting Hu, Shaowen Jiang, Xiaowei Guo, Mingjie Wang, Congcong Liang, Jingyu Wu, Yimei Li, Mengmeng Li, Quanying Qin, Changjiang |
author_sort | Xiao, Yafei |
collection | PubMed |
description | As the third most common cancer and the second leading cause of cancer death worldwide, colorectal cancer (CRC) poses a serious threat to people’s health. In recent years, circRNA has been widely reported as a new biomarker in CRC, but a comprehensive summary and analysis is lacking. This study aims to evaluate the diagnostic, therapeutic and prognostic significance of circRNAs in CRC by systematically analysing their expression patterns, biological functions and clinical significance in CRC. The literature on circRNA in CRC was searched in the PubMed database and included for analysis after screening according to strict inclusion and exclusion criteria. The UALCAN online tool was used to obtain host gene expression data. The miRTargetLink 2.0 was used to predict target genes for miRNAs action in CRC patients. Cytoscape was used to construct circRNA-miRNA-mRNA interaction networks. From the 236 included papers, we identified 217 circRNAs and their associated 108 host genes and 145 miRNAs. Among the 145 miRNAs, 27 miRNAs had no corresponding target genes. After prediction of target genes and differential analysis, a total of 25 target genes were obtained and a circRNA-miRNA-mRNA interaction network was constructed. Among the 217 circRNAs, 74 were associated with diagnosis, 160 with treatment and 51 with prognosis. And 154 of them function as oncogenes while 58 as tumour suppressor genes. In addition, these circRNAs include 32 exosomal circRNAs, which have unique advantages as biomarkers. In total, we summarize and analyze the expression patterns, biological functions and clinical significance of circRNAs in CRC. In addition, we constructed some new circRNA-miRNA-mRNA regulatory axes based on the miRNAs sponged by circRNAs. |
format | Online Article Text |
id | pubmed-9597305 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95973052022-10-27 Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer Xiao, Yafei Qiu, Mengyuan Tan, Cong Huang, Wanting Hu, Shaowen Jiang, Xiaowei Guo, Mingjie Wang, Congcong Liang, Jingyu Wu, Yimei Li, Mengmeng Li, Quanying Qin, Changjiang Front Genet Genetics As the third most common cancer and the second leading cause of cancer death worldwide, colorectal cancer (CRC) poses a serious threat to people’s health. In recent years, circRNA has been widely reported as a new biomarker in CRC, but a comprehensive summary and analysis is lacking. This study aims to evaluate the diagnostic, therapeutic and prognostic significance of circRNAs in CRC by systematically analysing their expression patterns, biological functions and clinical significance in CRC. The literature on circRNA in CRC was searched in the PubMed database and included for analysis after screening according to strict inclusion and exclusion criteria. The UALCAN online tool was used to obtain host gene expression data. The miRTargetLink 2.0 was used to predict target genes for miRNAs action in CRC patients. Cytoscape was used to construct circRNA-miRNA-mRNA interaction networks. From the 236 included papers, we identified 217 circRNAs and their associated 108 host genes and 145 miRNAs. Among the 145 miRNAs, 27 miRNAs had no corresponding target genes. After prediction of target genes and differential analysis, a total of 25 target genes were obtained and a circRNA-miRNA-mRNA interaction network was constructed. Among the 217 circRNAs, 74 were associated with diagnosis, 160 with treatment and 51 with prognosis. And 154 of them function as oncogenes while 58 as tumour suppressor genes. In addition, these circRNAs include 32 exosomal circRNAs, which have unique advantages as biomarkers. In total, we summarize and analyze the expression patterns, biological functions and clinical significance of circRNAs in CRC. In addition, we constructed some new circRNA-miRNA-mRNA regulatory axes based on the miRNAs sponged by circRNAs. Frontiers Media S.A. 2022-10-12 /pmc/articles/PMC9597305/ /pubmed/36313458 http://dx.doi.org/10.3389/fgene.2022.938672 Text en Copyright © 2022 Xiao, Qiu, Tan, Huang, Hu, Jiang, Guo, Wang, Liang, Wu, Li, Li and Qin. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Xiao, Yafei Qiu, Mengyuan Tan, Cong Huang, Wanting Hu, Shaowen Jiang, Xiaowei Guo, Mingjie Wang, Congcong Liang, Jingyu Wu, Yimei Li, Mengmeng Li, Quanying Qin, Changjiang Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer |
title | Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer |
title_full | Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer |
title_fullStr | Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer |
title_full_unstemmed | Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer |
title_short | Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer |
title_sort | systematic analysis of circrna biomarkers for diagnosis, prognosis and therapy in colorectal cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9597305/ https://www.ncbi.nlm.nih.gov/pubmed/36313458 http://dx.doi.org/10.3389/fgene.2022.938672 |
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