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Prediction of the Ibuprofen Loading Capacity of MOFs by Machine Learning

Metal-organic frameworks (MOFs) have been widely researched as drug delivery systems due to their intrinsic porous structures. Herein, machine learning (ML) technologies were applied for the screening of MOFs with high drug loading capacity. To achieve this, first, a comprehensive dataset was gather...

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Autores principales: Liu, Xujie, Wang, Yang, Yuan, Jiongpeng, Li, Xiaojing, Wu, Siwei, Bao, Ying, Feng, Zhenzhen, Ou, Feilong, He, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9598200/
https://www.ncbi.nlm.nih.gov/pubmed/36290485
http://dx.doi.org/10.3390/bioengineering9100517
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author Liu, Xujie
Wang, Yang
Yuan, Jiongpeng
Li, Xiaojing
Wu, Siwei
Bao, Ying
Feng, Zhenzhen
Ou, Feilong
He, Yan
author_facet Liu, Xujie
Wang, Yang
Yuan, Jiongpeng
Li, Xiaojing
Wu, Siwei
Bao, Ying
Feng, Zhenzhen
Ou, Feilong
He, Yan
author_sort Liu, Xujie
collection PubMed
description Metal-organic frameworks (MOFs) have been widely researched as drug delivery systems due to their intrinsic porous structures. Herein, machine learning (ML) technologies were applied for the screening of MOFs with high drug loading capacity. To achieve this, first, a comprehensive dataset was gathered, including 40 data points from more than 100 different publications. The organic linkers, metal ions, and the functional groups, as well as the surface area and the pore volume of the investigated MOFs, were chosen as the model’s inputs, and the output was the ibuprofen (IBU) loading capacity. Thereafter, various advanced and powerful machine learning algorithms, such as support vector regression (SVR), random forest (RF), adaptive boosting (AdaBoost), and categorical boosting (CatBoost), were employed to predict the ibuprofen loading capacity of MOFs. The coefficient of determination (R(2)) of 0.70, 0.72, 0.66, and 0.76 were obtained for the SVR, RF, AdaBoost, and CatBoost approaches, respectively. Among all the algorithms, CatBoost was the most reliable, exhibiting superior performance regarding the sparse matrices and categorical features. Shapley additive explanations (SHAP) analysis was employed to explore the impact of the eigenvalues of the model’s outputs. Our initial results indicate that this methodology is a well generalized, straightforward, and cost-effective method that can be applied not only for the prediction of IBU loading capacity, but also in many other biomaterials projects.
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spelling pubmed-95982002022-10-27 Prediction of the Ibuprofen Loading Capacity of MOFs by Machine Learning Liu, Xujie Wang, Yang Yuan, Jiongpeng Li, Xiaojing Wu, Siwei Bao, Ying Feng, Zhenzhen Ou, Feilong He, Yan Bioengineering (Basel) Article Metal-organic frameworks (MOFs) have been widely researched as drug delivery systems due to their intrinsic porous structures. Herein, machine learning (ML) technologies were applied for the screening of MOFs with high drug loading capacity. To achieve this, first, a comprehensive dataset was gathered, including 40 data points from more than 100 different publications. The organic linkers, metal ions, and the functional groups, as well as the surface area and the pore volume of the investigated MOFs, were chosen as the model’s inputs, and the output was the ibuprofen (IBU) loading capacity. Thereafter, various advanced and powerful machine learning algorithms, such as support vector regression (SVR), random forest (RF), adaptive boosting (AdaBoost), and categorical boosting (CatBoost), were employed to predict the ibuprofen loading capacity of MOFs. The coefficient of determination (R(2)) of 0.70, 0.72, 0.66, and 0.76 were obtained for the SVR, RF, AdaBoost, and CatBoost approaches, respectively. Among all the algorithms, CatBoost was the most reliable, exhibiting superior performance regarding the sparse matrices and categorical features. Shapley additive explanations (SHAP) analysis was employed to explore the impact of the eigenvalues of the model’s outputs. Our initial results indicate that this methodology is a well generalized, straightforward, and cost-effective method that can be applied not only for the prediction of IBU loading capacity, but also in many other biomaterials projects. MDPI 2022-09-30 /pmc/articles/PMC9598200/ /pubmed/36290485 http://dx.doi.org/10.3390/bioengineering9100517 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Xujie
Wang, Yang
Yuan, Jiongpeng
Li, Xiaojing
Wu, Siwei
Bao, Ying
Feng, Zhenzhen
Ou, Feilong
He, Yan
Prediction of the Ibuprofen Loading Capacity of MOFs by Machine Learning
title Prediction of the Ibuprofen Loading Capacity of MOFs by Machine Learning
title_full Prediction of the Ibuprofen Loading Capacity of MOFs by Machine Learning
title_fullStr Prediction of the Ibuprofen Loading Capacity of MOFs by Machine Learning
title_full_unstemmed Prediction of the Ibuprofen Loading Capacity of MOFs by Machine Learning
title_short Prediction of the Ibuprofen Loading Capacity of MOFs by Machine Learning
title_sort prediction of the ibuprofen loading capacity of mofs by machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9598200/
https://www.ncbi.nlm.nih.gov/pubmed/36290485
http://dx.doi.org/10.3390/bioengineering9100517
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