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A Novel System for Precise Grading of Glioma

Gliomas are the most common type of primary brain tumors and one of the highest causes of mortality worldwide. Accurate grading of gliomas is of immense importance to administer proper treatment plans. In this paper, we develop a comprehensive non-invasive multimodal magnetic resonance (MR)-based co...

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Autores principales: Alksas, Ahmed, Shehata, Mohamed, Atef, Hala, Sherif, Fatma, Alghamdi, Norah Saleh, Ghazal, Mohammed, Abdel Fattah, Sherif, El-Serougy, Lamiaa Galal, El-Baz, Ayman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9598212/
https://www.ncbi.nlm.nih.gov/pubmed/36290500
http://dx.doi.org/10.3390/bioengineering9100532
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author Alksas, Ahmed
Shehata, Mohamed
Atef, Hala
Sherif, Fatma
Alghamdi, Norah Saleh
Ghazal, Mohammed
Abdel Fattah, Sherif
El-Serougy, Lamiaa Galal
El-Baz, Ayman
author_facet Alksas, Ahmed
Shehata, Mohamed
Atef, Hala
Sherif, Fatma
Alghamdi, Norah Saleh
Ghazal, Mohammed
Abdel Fattah, Sherif
El-Serougy, Lamiaa Galal
El-Baz, Ayman
author_sort Alksas, Ahmed
collection PubMed
description Gliomas are the most common type of primary brain tumors and one of the highest causes of mortality worldwide. Accurate grading of gliomas is of immense importance to administer proper treatment plans. In this paper, we develop a comprehensive non-invasive multimodal magnetic resonance (MR)-based computer-aided diagnostic (CAD) system to precisely differentiate between different grades of gliomas (Grades: I, II, III, and IV). A total of 99 patients with gliomas (M = 49, F = 50, age range = 1–79 years) were included after providing their informed consent to participate in this study. The proposed imaging-based glioma grading (GG-CAD) system utilizes three different MR imaging modalities, namely; contrast-enhanced T1-MR, T2-MR known as fluid-attenuated inversion-recovery (FLAIR), and diffusion-weighted (DW-MR) to extract the following imaging features: (i) morphological features based on constructing the histogram of oriented gradients (HOG) and estimating the glioma volume, (ii) first and second orders textural features by constructing histogram, gray-level run length matrix (GLRLM), and gray-level co-occurrence matrix (GLCM), (iii) functional features by estimating voxel-wise apparent diffusion coefficients (ADC) and contrast-enhancement slope. These features are then integrated together and processed using a Gini impurity-based selection approach to find the optimal set of significant features. The reduced significant features are then fed to a multi-layer perceptron artificial neural networks (MLP-ANN) classification model to obtain the final diagnosis of a glioma tumor as Grade I, II, III, or IV. The GG-CAD system was evaluated on the enrolled 99 gliomas (Grade I = 13, Grade II = 22, Grade III = 22, and Grade IV = 42) using a leave-one-subject-out (LOSO) and k-fold stratified (with k = 5 and 10) cross-validation approach. The GG-CAD achieved 0.96 ± 0.02 quadratic-weighted Cohen’s kappa and 95.8% ± 1.9% overall diagnostic accuracy at LOSO and an outstanding diagnostic performance at k = 10 and 5. Alternative classifiers, including RFs and SVM [Formula: see text] produced inferior results compared to the proposed MLP-ANN GG-CAD system. These findings demonstrate the feasibility of the proposed CAD system as a novel tool to objectively characterize gliomas using the comprehensive extracted and selected imaging features. The developed GG-CAD system holds promise to be used as a non-invasive diagnostic tool for Precise Grading of Glioma.
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spelling pubmed-95982122022-10-27 A Novel System for Precise Grading of Glioma Alksas, Ahmed Shehata, Mohamed Atef, Hala Sherif, Fatma Alghamdi, Norah Saleh Ghazal, Mohammed Abdel Fattah, Sherif El-Serougy, Lamiaa Galal El-Baz, Ayman Bioengineering (Basel) Article Gliomas are the most common type of primary brain tumors and one of the highest causes of mortality worldwide. Accurate grading of gliomas is of immense importance to administer proper treatment plans. In this paper, we develop a comprehensive non-invasive multimodal magnetic resonance (MR)-based computer-aided diagnostic (CAD) system to precisely differentiate between different grades of gliomas (Grades: I, II, III, and IV). A total of 99 patients with gliomas (M = 49, F = 50, age range = 1–79 years) were included after providing their informed consent to participate in this study. The proposed imaging-based glioma grading (GG-CAD) system utilizes three different MR imaging modalities, namely; contrast-enhanced T1-MR, T2-MR known as fluid-attenuated inversion-recovery (FLAIR), and diffusion-weighted (DW-MR) to extract the following imaging features: (i) morphological features based on constructing the histogram of oriented gradients (HOG) and estimating the glioma volume, (ii) first and second orders textural features by constructing histogram, gray-level run length matrix (GLRLM), and gray-level co-occurrence matrix (GLCM), (iii) functional features by estimating voxel-wise apparent diffusion coefficients (ADC) and contrast-enhancement slope. These features are then integrated together and processed using a Gini impurity-based selection approach to find the optimal set of significant features. The reduced significant features are then fed to a multi-layer perceptron artificial neural networks (MLP-ANN) classification model to obtain the final diagnosis of a glioma tumor as Grade I, II, III, or IV. The GG-CAD system was evaluated on the enrolled 99 gliomas (Grade I = 13, Grade II = 22, Grade III = 22, and Grade IV = 42) using a leave-one-subject-out (LOSO) and k-fold stratified (with k = 5 and 10) cross-validation approach. The GG-CAD achieved 0.96 ± 0.02 quadratic-weighted Cohen’s kappa and 95.8% ± 1.9% overall diagnostic accuracy at LOSO and an outstanding diagnostic performance at k = 10 and 5. Alternative classifiers, including RFs and SVM [Formula: see text] produced inferior results compared to the proposed MLP-ANN GG-CAD system. These findings demonstrate the feasibility of the proposed CAD system as a novel tool to objectively characterize gliomas using the comprehensive extracted and selected imaging features. The developed GG-CAD system holds promise to be used as a non-invasive diagnostic tool for Precise Grading of Glioma. MDPI 2022-10-07 /pmc/articles/PMC9598212/ /pubmed/36290500 http://dx.doi.org/10.3390/bioengineering9100532 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Alksas, Ahmed
Shehata, Mohamed
Atef, Hala
Sherif, Fatma
Alghamdi, Norah Saleh
Ghazal, Mohammed
Abdel Fattah, Sherif
El-Serougy, Lamiaa Galal
El-Baz, Ayman
A Novel System for Precise Grading of Glioma
title A Novel System for Precise Grading of Glioma
title_full A Novel System for Precise Grading of Glioma
title_fullStr A Novel System for Precise Grading of Glioma
title_full_unstemmed A Novel System for Precise Grading of Glioma
title_short A Novel System for Precise Grading of Glioma
title_sort novel system for precise grading of glioma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9598212/
https://www.ncbi.nlm.nih.gov/pubmed/36290500
http://dx.doi.org/10.3390/bioengineering9100532
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