Cargando…

A Bioinformatics-Based Analysis of an Anoikis-Related Gene Signature Predicts the Prognosis of Patients with Low-Grade Gliomas

Low-grade glioma (LGG) is a highly aggressive disease in the skull. On the other hand, anoikis, a specific form of cell death induced by the loss of cell contact with the extracellular matrix, plays a key role in cancer metastasis. In this study, anoikis-related genes (ANRGs) were used to identify L...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhao, Songyun, Chi, Hao, Ji, Wei, He, Qisheng, Lai, Guichuan, Peng, Gaoge, Zhao, Xiaoyu, Cheng, Chao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9599312/
https://www.ncbi.nlm.nih.gov/pubmed/36291283
http://dx.doi.org/10.3390/brainsci12101349
_version_ 1784816563956744192
author Zhao, Songyun
Chi, Hao
Ji, Wei
He, Qisheng
Lai, Guichuan
Peng, Gaoge
Zhao, Xiaoyu
Cheng, Chao
author_facet Zhao, Songyun
Chi, Hao
Ji, Wei
He, Qisheng
Lai, Guichuan
Peng, Gaoge
Zhao, Xiaoyu
Cheng, Chao
author_sort Zhao, Songyun
collection PubMed
description Low-grade glioma (LGG) is a highly aggressive disease in the skull. On the other hand, anoikis, a specific form of cell death induced by the loss of cell contact with the extracellular matrix, plays a key role in cancer metastasis. In this study, anoikis-related genes (ANRGs) were used to identify LGG subtypes and to construct a prognostic model for LGG patients. In addition, we explored the immune microenvironment and enrichment pathways between different subtypes. We constructed an anoikis-related gene signature using the TCGA (The Cancer Genome Atlas) cohort and investigated the differences between different risk groups in clinical features, mutational landscape, immune cell infiltration (ICI), etc. Kaplan–Meier analysis showed that the characteristics of ANRGs in the high-risk group were associated with poor prognosis in LGG patients. The risk score was identified as an independent prognostic factor. The high-risk group had higher ICI, tumor mutation load (TMB), immune checkpoint gene expression, and therapeutic response to immune checkpoint blockers (ICB). Functional analysis showed that these high-risk and low-risk groups had different immune statuses and drug sensitivity. Risk scores were used together with LGG clinicopathological features to construct a nomogram, and Decision Curve Analysis (DCA) showed that the model could enable patients to benefit from clinical treatment strategies.
format Online
Article
Text
id pubmed-9599312
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-95993122022-10-27 A Bioinformatics-Based Analysis of an Anoikis-Related Gene Signature Predicts the Prognosis of Patients with Low-Grade Gliomas Zhao, Songyun Chi, Hao Ji, Wei He, Qisheng Lai, Guichuan Peng, Gaoge Zhao, Xiaoyu Cheng, Chao Brain Sci Article Low-grade glioma (LGG) is a highly aggressive disease in the skull. On the other hand, anoikis, a specific form of cell death induced by the loss of cell contact with the extracellular matrix, plays a key role in cancer metastasis. In this study, anoikis-related genes (ANRGs) were used to identify LGG subtypes and to construct a prognostic model for LGG patients. In addition, we explored the immune microenvironment and enrichment pathways between different subtypes. We constructed an anoikis-related gene signature using the TCGA (The Cancer Genome Atlas) cohort and investigated the differences between different risk groups in clinical features, mutational landscape, immune cell infiltration (ICI), etc. Kaplan–Meier analysis showed that the characteristics of ANRGs in the high-risk group were associated with poor prognosis in LGG patients. The risk score was identified as an independent prognostic factor. The high-risk group had higher ICI, tumor mutation load (TMB), immune checkpoint gene expression, and therapeutic response to immune checkpoint blockers (ICB). Functional analysis showed that these high-risk and low-risk groups had different immune statuses and drug sensitivity. Risk scores were used together with LGG clinicopathological features to construct a nomogram, and Decision Curve Analysis (DCA) showed that the model could enable patients to benefit from clinical treatment strategies. MDPI 2022-10-05 /pmc/articles/PMC9599312/ /pubmed/36291283 http://dx.doi.org/10.3390/brainsci12101349 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhao, Songyun
Chi, Hao
Ji, Wei
He, Qisheng
Lai, Guichuan
Peng, Gaoge
Zhao, Xiaoyu
Cheng, Chao
A Bioinformatics-Based Analysis of an Anoikis-Related Gene Signature Predicts the Prognosis of Patients with Low-Grade Gliomas
title A Bioinformatics-Based Analysis of an Anoikis-Related Gene Signature Predicts the Prognosis of Patients with Low-Grade Gliomas
title_full A Bioinformatics-Based Analysis of an Anoikis-Related Gene Signature Predicts the Prognosis of Patients with Low-Grade Gliomas
title_fullStr A Bioinformatics-Based Analysis of an Anoikis-Related Gene Signature Predicts the Prognosis of Patients with Low-Grade Gliomas
title_full_unstemmed A Bioinformatics-Based Analysis of an Anoikis-Related Gene Signature Predicts the Prognosis of Patients with Low-Grade Gliomas
title_short A Bioinformatics-Based Analysis of an Anoikis-Related Gene Signature Predicts the Prognosis of Patients with Low-Grade Gliomas
title_sort bioinformatics-based analysis of an anoikis-related gene signature predicts the prognosis of patients with low-grade gliomas
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9599312/
https://www.ncbi.nlm.nih.gov/pubmed/36291283
http://dx.doi.org/10.3390/brainsci12101349
work_keys_str_mv AT zhaosongyun abioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT chihao abioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT jiwei abioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT heqisheng abioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT laiguichuan abioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT penggaoge abioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT zhaoxiaoyu abioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT chengchao abioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT zhaosongyun bioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT chihao bioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT jiwei bioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT heqisheng bioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT laiguichuan bioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT penggaoge bioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT zhaoxiaoyu bioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas
AT chengchao bioinformaticsbasedanalysisofananoikisrelatedgenesignaturepredictstheprognosisofpatientswithlowgradegliomas