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Selection of Specific Aptamer against Rivaroxaban and Utilization for Label-Free Electrochemical Aptasensing Using Gold Nanoparticles: First Announcement and Application for Clinical Sample Analysis

For the first time, a novel aptamer was designed and utilized for the selective detection of rivaroxaban (RIV) using the integration of bioinformatics with biosensing technology. The selected aptamer with the sequence 5′-TAG GGA AGA GAA GGA CAT ATG ATG ACT CAC AAC TGG ACG AAC GTA CTT ATC CCC CCC AAT...

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Autores principales: Ebrahimi, Rokhsareh, Barzegari, Abolfazl, Teimuri-Mofrad, Reza, Kordasht, Houman Kholafazad, Hasanzadeh, Mohammad, Khoubnasabjafari, Maryam, Jouyban-Gharamaleki, Vahid, Rad, Abbas Afrasiabi, Shadjou, Nasrin, Rashidi, Mohammad-Reza, Afshar Mogaddam, Mohammad Reza, Jouyban, Abolghasem
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9599351/
https://www.ncbi.nlm.nih.gov/pubmed/36290911
http://dx.doi.org/10.3390/bios12100773
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author Ebrahimi, Rokhsareh
Barzegari, Abolfazl
Teimuri-Mofrad, Reza
Kordasht, Houman Kholafazad
Hasanzadeh, Mohammad
Khoubnasabjafari, Maryam
Jouyban-Gharamaleki, Vahid
Rad, Abbas Afrasiabi
Shadjou, Nasrin
Rashidi, Mohammad-Reza
Afshar Mogaddam, Mohammad Reza
Jouyban, Abolghasem
author_facet Ebrahimi, Rokhsareh
Barzegari, Abolfazl
Teimuri-Mofrad, Reza
Kordasht, Houman Kholafazad
Hasanzadeh, Mohammad
Khoubnasabjafari, Maryam
Jouyban-Gharamaleki, Vahid
Rad, Abbas Afrasiabi
Shadjou, Nasrin
Rashidi, Mohammad-Reza
Afshar Mogaddam, Mohammad Reza
Jouyban, Abolghasem
author_sort Ebrahimi, Rokhsareh
collection PubMed
description For the first time, a novel aptamer was designed and utilized for the selective detection of rivaroxaban (RIV) using the integration of bioinformatics with biosensing technology. The selected aptamer with the sequence 5′-TAG GGA AGA GAA GGA CAT ATG ATG ACT CAC AAC TGG ACG AAC GTA CTT ATC CCC CCC AAT CAC TAG TGA ATT-3′ displayed a high binding affinity to RIV and had an efficient ability to discriminate RIV from similar molecular structures. A novel label-free electrochemical aptasensor was designed and fabricated through the conjugation of a thiolated aptamer with Au nanoparticles (Au-NPs). Then, the aptasensor was successfully applied for the quantitative determination of RIV in human plasma and exhaled breath condensate (EBC) samples with limits of detection (LODs) of 14.08 and 6.03 nM, respectively. These valuable results provide ample evidence of the green electrogeneration of AuNPs on the surface of electrodes and their interaction with loaded aptamers (based on Au-S binding) towards the sensitive and selective monitoring of RIV in human plasma and EBC samples. This bio-assay is an alternative approach for the clinical analysis of RIV and has improved specificity and affinity. As far as we know, this is the first time that an electrochemical aptasensor has been verified for the recognition of RIV and that allows for the easy, fast, and precise screening of RIV in biological samples.
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spelling pubmed-95993512022-10-27 Selection of Specific Aptamer against Rivaroxaban and Utilization for Label-Free Electrochemical Aptasensing Using Gold Nanoparticles: First Announcement and Application for Clinical Sample Analysis Ebrahimi, Rokhsareh Barzegari, Abolfazl Teimuri-Mofrad, Reza Kordasht, Houman Kholafazad Hasanzadeh, Mohammad Khoubnasabjafari, Maryam Jouyban-Gharamaleki, Vahid Rad, Abbas Afrasiabi Shadjou, Nasrin Rashidi, Mohammad-Reza Afshar Mogaddam, Mohammad Reza Jouyban, Abolghasem Biosensors (Basel) Article For the first time, a novel aptamer was designed and utilized for the selective detection of rivaroxaban (RIV) using the integration of bioinformatics with biosensing technology. The selected aptamer with the sequence 5′-TAG GGA AGA GAA GGA CAT ATG ATG ACT CAC AAC TGG ACG AAC GTA CTT ATC CCC CCC AAT CAC TAG TGA ATT-3′ displayed a high binding affinity to RIV and had an efficient ability to discriminate RIV from similar molecular structures. A novel label-free electrochemical aptasensor was designed and fabricated through the conjugation of a thiolated aptamer with Au nanoparticles (Au-NPs). Then, the aptasensor was successfully applied for the quantitative determination of RIV in human plasma and exhaled breath condensate (EBC) samples with limits of detection (LODs) of 14.08 and 6.03 nM, respectively. These valuable results provide ample evidence of the green electrogeneration of AuNPs on the surface of electrodes and their interaction with loaded aptamers (based on Au-S binding) towards the sensitive and selective monitoring of RIV in human plasma and EBC samples. This bio-assay is an alternative approach for the clinical analysis of RIV and has improved specificity and affinity. As far as we know, this is the first time that an electrochemical aptasensor has been verified for the recognition of RIV and that allows for the easy, fast, and precise screening of RIV in biological samples. MDPI 2022-09-20 /pmc/articles/PMC9599351/ /pubmed/36290911 http://dx.doi.org/10.3390/bios12100773 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ebrahimi, Rokhsareh
Barzegari, Abolfazl
Teimuri-Mofrad, Reza
Kordasht, Houman Kholafazad
Hasanzadeh, Mohammad
Khoubnasabjafari, Maryam
Jouyban-Gharamaleki, Vahid
Rad, Abbas Afrasiabi
Shadjou, Nasrin
Rashidi, Mohammad-Reza
Afshar Mogaddam, Mohammad Reza
Jouyban, Abolghasem
Selection of Specific Aptamer against Rivaroxaban and Utilization for Label-Free Electrochemical Aptasensing Using Gold Nanoparticles: First Announcement and Application for Clinical Sample Analysis
title Selection of Specific Aptamer against Rivaroxaban and Utilization for Label-Free Electrochemical Aptasensing Using Gold Nanoparticles: First Announcement and Application for Clinical Sample Analysis
title_full Selection of Specific Aptamer against Rivaroxaban and Utilization for Label-Free Electrochemical Aptasensing Using Gold Nanoparticles: First Announcement and Application for Clinical Sample Analysis
title_fullStr Selection of Specific Aptamer against Rivaroxaban and Utilization for Label-Free Electrochemical Aptasensing Using Gold Nanoparticles: First Announcement and Application for Clinical Sample Analysis
title_full_unstemmed Selection of Specific Aptamer against Rivaroxaban and Utilization for Label-Free Electrochemical Aptasensing Using Gold Nanoparticles: First Announcement and Application for Clinical Sample Analysis
title_short Selection of Specific Aptamer against Rivaroxaban and Utilization for Label-Free Electrochemical Aptasensing Using Gold Nanoparticles: First Announcement and Application for Clinical Sample Analysis
title_sort selection of specific aptamer against rivaroxaban and utilization for label-free electrochemical aptasensing using gold nanoparticles: first announcement and application for clinical sample analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9599351/
https://www.ncbi.nlm.nih.gov/pubmed/36290911
http://dx.doi.org/10.3390/bios12100773
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