Cargando…

Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References

Assigning taxonomy remains a challenging topic in microbiome studies, due largely to ambiguity of reads which overlap multiple reference genomes. With the Web of Life (WoL) reference database hosting 10,575 reference genomes and growing, the percentage of ambiguous reads will only increase. The resu...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hakim, Daniel, Wandro, Stephen, Zengler, Karsten, Zaramela, Livia S., Nowinski, Brent, Swafford, Austin, Zhu, Qiyun, Song, Se Jin, Gonzalez, Antonio, McDonald, Daniel, Knight, Rob
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2022
Materias:	Observation
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9600373/ https://www.ncbi.nlm.nih.gov/pubmed/36073806 http://dx.doi.org/10.1128/msystems.00758-22

Ejemplares similares

Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases
por: Armstrong, George, et al.
Publicado: (2022)

Elucidation of complexity and prediction of interactions in microbial communities
por: Zuñiga, Cristal, et al.
Publicado: (2017)

Improving saliva shotgun metagenomics by chemical host DNA depletion
por: Marotz, Clarisse A., et al.
Publicado: (2018)

synDNA—a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing
por: Zaramela, Livia S., et al.
Publicado: (2022)

Establishing microbial composition measurement standards with reference frames
por: Morton, James T., et al.
Publicado: (2019)

Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV
por: Taylor, Bryn C., et al.
Publicado: (2020)

Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase
por: Sfiligoi, Igor, et al.
Publicado: (2022)

Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses
por: Kumar, Tanya, et al.
Publicado: (2022)

THE SIMPLEX FLICKER THRESHOLD CONTOUR FOR THE ZEBRA FINCH
por: Crozier, W. J., et al.
Publicado: (1941)

redbiom: a Rapid Sample Discovery and Feature Characterization System
por: McDonald, Daniel, et al.
Publicado: (2019)

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping
por: Amir, Amnon, et al.
Publicado: (2017)

The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder
por: Dilmore, Amanda H., et al.
Publicado: (2021)

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age
por: Huang, Shi, et al.
Publicado: (2020)

Extreme Dysbiosis of the Microbiome in Critical Illness
por: McDonald, Daniel, et al.
Publicado: (2016)

Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution
por: Brennan, Caitriona, et al.
Publicado: (2023)

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
por: Amir, Amnon, et al.
Publicado: (2017)

Metabolic capability and in situ activity of microorganisms in an oil reservoir
por: Liu, Yi-Fan, et al.
Publicado: (2018)

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome
por: Tripathi, Anupriya, et al.
Publicado: (2018)

Case of a Man, Whose Body Was Covered with Encysted Tumours
Publicado: (1785)

Guild and Niche Determination Enable Targeted Alteration of the Microbiome
por: Moyne, Oriane, et al.
Publicado: (2023)

A Phenotypically Silent vanB2 Operon Carried on a Tn1549-Like Element in Clostridium difficile
por: Knight, Daniel R., et al.
Publicado: (2016)

Overlap of orthorexia, eating attitude and psychological distress in some Italian and Spanish university students
por: Aiello, Paola, et al.
Publicado: (2022)

Optimization of carbon and energy utilization through differential translational efficiency
por: Al-Bassam, Mahmoud M., et al.
Publicado: (2018)

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
por: Shaffer, Justin P., et al.
Publicado: (2020)

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
por: Shaffer, Justin P, et al.
Publicado: (2021)

Static pressures, intra-access blood flow and dynamic Kt/V profiles in the prediction of dialysis access function
por: Koratala, Abhilash, et al.
Publicado: (2019)

Disturbed passage of jejunal limb near esophageal hiatus after overlapped esophagojejunostomy following laparoscopic total gastrectomy
por: Noshiro, Hirokazu, et al.
Publicado: (2022)

Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea
por: Ten-Caten, Felipe, et al.
Publicado: (2018)

Impact of lockdown relaxation and implementation of the face-covering policy on mental health: A United Kingdom COVID-19 study
por: Rathod, Shanaya, et al.
Publicado: (2021)

The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps
por: Hanes, Douglas, et al.
Publicado: (2022)

Short-term outcomes of overlapped delta-shaped anastomosis, an innovative intracorporeal anastomosis technique, in totally laparoscopic colectomy for colon cancer
por: Zhou, Hai-Tao, et al.
Publicado: (2017)

Psychological Features in the Inflammatory Bowel Disease–Irritable Bowel Syndrome Overlap: Developing a Preliminary Understanding of Cognitive and Behavioral Factors
por: Petrik, Megan, et al.
Publicado: (2021)

Together, Slowly but Surely: The Role of Social Interaction and Feedback on the Build-Up of Benefit in Collective Decision-Making
por: Bahrami, Bahador, et al.
Publicado: (2012)

Synergistic Activity of Colistin in Combination with Clofoctol against Colistin Resistant Gram-Negative Pathogens
por: Collalto, Diletta, et al.
Publicado: (2023)

Clinical utility of two-dimensional shear-wave elastography in monitoring disease course in autoimmune hepatitis-primary biliary cholangitis overlap syndrome
por: Yan, Yu-Ling, et al.
Publicado: (2022)

Signaling thresholds govern heterogeneity in IL-7-receptor-mediated responses of naïve CD8(+) T cells
por: Palmer, Megan J, et al.
Publicado: (2011)

Lowering the threshold of alanine aminotransferase for enhanced identification of significant hepatic injury in chronic hepatitis B patients
por: Yu, Hong-Sheng, et al.
Publicado: (2023)

Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort
por: Gonzalez, Antonio, et al.
Publicado: (2016)

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea
por: Gomes-Filho, José Vicente, et al.
Publicado: (2015)

Translocation a potential corridor for equine piroplasms in Cape mountain zebra (Equus zebra zebra)
por: Smith, Rae Marvin, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_bfo3pv3965h8djb2hbsb5pigi3