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Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network

Chronic obstructive pulmonary disease (COPD) is a preventable, treatable, progressive chronic disease characterized by persistent airflow limitation. Patients with COPD deserve special consideration regarding treatment in this fragile population for preclinical health management. Therefore, this pap...

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Autores principales: Yang, Yingjian, Wang, Shicong, Zeng, Nanrong, Duan, Wenxin, Chen, Ziran, Liu, Yang, Li, Wei, Guo, Yingwei, Chen, Huai, Li, Xian, Chen, Rongchang, Kang, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9600898/
https://www.ncbi.nlm.nih.gov/pubmed/36291964
http://dx.doi.org/10.3390/diagnostics12102274
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author Yang, Yingjian
Wang, Shicong
Zeng, Nanrong
Duan, Wenxin
Chen, Ziran
Liu, Yang
Li, Wei
Guo, Yingwei
Chen, Huai
Li, Xian
Chen, Rongchang
Kang, Yan
author_facet Yang, Yingjian
Wang, Shicong
Zeng, Nanrong
Duan, Wenxin
Chen, Ziran
Liu, Yang
Li, Wei
Guo, Yingwei
Chen, Huai
Li, Xian
Chen, Rongchang
Kang, Yan
author_sort Yang, Yingjian
collection PubMed
description Chronic obstructive pulmonary disease (COPD) is a preventable, treatable, progressive chronic disease characterized by persistent airflow limitation. Patients with COPD deserve special consideration regarding treatment in this fragile population for preclinical health management. Therefore, this paper proposes a novel lung radiomics combination vector generated by a generalized linear model (GLM) and Lasso algorithm for COPD stage classification based on an auto-metric graph neural network (AMGNN) with a meta-learning strategy. Firstly, the parenchyma images were segmented from chest high-resolution computed tomography (HRCT) images by ResU-Net. Second, lung radiomics features are extracted from the parenchyma images by PyRadiomics. Third, a novel lung radiomics combination vector (3 + 106) is constructed by the GLM and Lasso algorithm for determining the radiomics risk factors (K = 3) and radiomics node features (d = 106). Last, the COPD stage is classified based on the AMGNN. The results show that compared with the convolutional neural networks and machine learning models, the AMGNN based on constructed novel lung radiomics combination vector performs best, achieving an accuracy of 0.943, precision of 0.946, recall of 0.943, F1-score of 0.943, and ACU of 0.984. Furthermore, it is found that our method is effective for COPD stage classification.
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spelling pubmed-96008982022-10-27 Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network Yang, Yingjian Wang, Shicong Zeng, Nanrong Duan, Wenxin Chen, Ziran Liu, Yang Li, Wei Guo, Yingwei Chen, Huai Li, Xian Chen, Rongchang Kang, Yan Diagnostics (Basel) Article Chronic obstructive pulmonary disease (COPD) is a preventable, treatable, progressive chronic disease characterized by persistent airflow limitation. Patients with COPD deserve special consideration regarding treatment in this fragile population for preclinical health management. Therefore, this paper proposes a novel lung radiomics combination vector generated by a generalized linear model (GLM) and Lasso algorithm for COPD stage classification based on an auto-metric graph neural network (AMGNN) with a meta-learning strategy. Firstly, the parenchyma images were segmented from chest high-resolution computed tomography (HRCT) images by ResU-Net. Second, lung radiomics features are extracted from the parenchyma images by PyRadiomics. Third, a novel lung radiomics combination vector (3 + 106) is constructed by the GLM and Lasso algorithm for determining the radiomics risk factors (K = 3) and radiomics node features (d = 106). Last, the COPD stage is classified based on the AMGNN. The results show that compared with the convolutional neural networks and machine learning models, the AMGNN based on constructed novel lung radiomics combination vector performs best, achieving an accuracy of 0.943, precision of 0.946, recall of 0.943, F1-score of 0.943, and ACU of 0.984. Furthermore, it is found that our method is effective for COPD stage classification. MDPI 2022-09-20 /pmc/articles/PMC9600898/ /pubmed/36291964 http://dx.doi.org/10.3390/diagnostics12102274 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yang, Yingjian
Wang, Shicong
Zeng, Nanrong
Duan, Wenxin
Chen, Ziran
Liu, Yang
Li, Wei
Guo, Yingwei
Chen, Huai
Li, Xian
Chen, Rongchang
Kang, Yan
Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network
title Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network
title_full Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network
title_fullStr Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network
title_full_unstemmed Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network
title_short Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network
title_sort lung radiomics features selection for copd stage classification based on auto-metric graph neural network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9600898/
https://www.ncbi.nlm.nih.gov/pubmed/36291964
http://dx.doi.org/10.3390/diagnostics12102274
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