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Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network
Chronic obstructive pulmonary disease (COPD) is a preventable, treatable, progressive chronic disease characterized by persistent airflow limitation. Patients with COPD deserve special consideration regarding treatment in this fragile population for preclinical health management. Therefore, this pap...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9600898/ https://www.ncbi.nlm.nih.gov/pubmed/36291964 http://dx.doi.org/10.3390/diagnostics12102274 |
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author | Yang, Yingjian Wang, Shicong Zeng, Nanrong Duan, Wenxin Chen, Ziran Liu, Yang Li, Wei Guo, Yingwei Chen, Huai Li, Xian Chen, Rongchang Kang, Yan |
author_facet | Yang, Yingjian Wang, Shicong Zeng, Nanrong Duan, Wenxin Chen, Ziran Liu, Yang Li, Wei Guo, Yingwei Chen, Huai Li, Xian Chen, Rongchang Kang, Yan |
author_sort | Yang, Yingjian |
collection | PubMed |
description | Chronic obstructive pulmonary disease (COPD) is a preventable, treatable, progressive chronic disease characterized by persistent airflow limitation. Patients with COPD deserve special consideration regarding treatment in this fragile population for preclinical health management. Therefore, this paper proposes a novel lung radiomics combination vector generated by a generalized linear model (GLM) and Lasso algorithm for COPD stage classification based on an auto-metric graph neural network (AMGNN) with a meta-learning strategy. Firstly, the parenchyma images were segmented from chest high-resolution computed tomography (HRCT) images by ResU-Net. Second, lung radiomics features are extracted from the parenchyma images by PyRadiomics. Third, a novel lung radiomics combination vector (3 + 106) is constructed by the GLM and Lasso algorithm for determining the radiomics risk factors (K = 3) and radiomics node features (d = 106). Last, the COPD stage is classified based on the AMGNN. The results show that compared with the convolutional neural networks and machine learning models, the AMGNN based on constructed novel lung radiomics combination vector performs best, achieving an accuracy of 0.943, precision of 0.946, recall of 0.943, F1-score of 0.943, and ACU of 0.984. Furthermore, it is found that our method is effective for COPD stage classification. |
format | Online Article Text |
id | pubmed-9600898 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96008982022-10-27 Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network Yang, Yingjian Wang, Shicong Zeng, Nanrong Duan, Wenxin Chen, Ziran Liu, Yang Li, Wei Guo, Yingwei Chen, Huai Li, Xian Chen, Rongchang Kang, Yan Diagnostics (Basel) Article Chronic obstructive pulmonary disease (COPD) is a preventable, treatable, progressive chronic disease characterized by persistent airflow limitation. Patients with COPD deserve special consideration regarding treatment in this fragile population for preclinical health management. Therefore, this paper proposes a novel lung radiomics combination vector generated by a generalized linear model (GLM) and Lasso algorithm for COPD stage classification based on an auto-metric graph neural network (AMGNN) with a meta-learning strategy. Firstly, the parenchyma images were segmented from chest high-resolution computed tomography (HRCT) images by ResU-Net. Second, lung radiomics features are extracted from the parenchyma images by PyRadiomics. Third, a novel lung radiomics combination vector (3 + 106) is constructed by the GLM and Lasso algorithm for determining the radiomics risk factors (K = 3) and radiomics node features (d = 106). Last, the COPD stage is classified based on the AMGNN. The results show that compared with the convolutional neural networks and machine learning models, the AMGNN based on constructed novel lung radiomics combination vector performs best, achieving an accuracy of 0.943, precision of 0.946, recall of 0.943, F1-score of 0.943, and ACU of 0.984. Furthermore, it is found that our method is effective for COPD stage classification. MDPI 2022-09-20 /pmc/articles/PMC9600898/ /pubmed/36291964 http://dx.doi.org/10.3390/diagnostics12102274 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yang, Yingjian Wang, Shicong Zeng, Nanrong Duan, Wenxin Chen, Ziran Liu, Yang Li, Wei Guo, Yingwei Chen, Huai Li, Xian Chen, Rongchang Kang, Yan Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network |
title | Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network |
title_full | Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network |
title_fullStr | Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network |
title_full_unstemmed | Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network |
title_short | Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network |
title_sort | lung radiomics features selection for copd stage classification based on auto-metric graph neural network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9600898/ https://www.ncbi.nlm.nih.gov/pubmed/36291964 http://dx.doi.org/10.3390/diagnostics12102274 |
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