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An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs
Extraction of subsets of highly connected nodes (“communities” or modules) is a standard step in the analysis of complex social and biological networks. We here consider the problem of finding a relatively small set of nodes in two labeled weighted graphs that is highly connected in both. While many...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601153/ https://www.ncbi.nlm.nih.gov/pubmed/37420347 http://dx.doi.org/10.3390/e24101329 |
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author | Obradovic, Predrag Kovačević, Vladimir Li, Xiqi Milosavljevic, Aleksandar |
author_facet | Obradovic, Predrag Kovačević, Vladimir Li, Xiqi Milosavljevic, Aleksandar |
author_sort | Obradovic, Predrag |
collection | PubMed |
description | Extraction of subsets of highly connected nodes (“communities” or modules) is a standard step in the analysis of complex social and biological networks. We here consider the problem of finding a relatively small set of nodes in two labeled weighted graphs that is highly connected in both. While many scoring functions and algorithms tackle the problem, the typically high computational cost of permutation testing required to establish the p-value for the observed pattern presents a major practical obstacle. To address this problem, we here extend the recently proposed CTD (“Connect the Dots”) approach to establish information-theoretic upper bounds on the p-values and lower bounds on the size and connectedness of communities that are detectable. This is an innovation on the applicability of CTD, broadening its use to pairs of graphs. |
format | Online Article Text |
id | pubmed-9601153 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96011532022-10-27 An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs Obradovic, Predrag Kovačević, Vladimir Li, Xiqi Milosavljevic, Aleksandar Entropy (Basel) Article Extraction of subsets of highly connected nodes (“communities” or modules) is a standard step in the analysis of complex social and biological networks. We here consider the problem of finding a relatively small set of nodes in two labeled weighted graphs that is highly connected in both. While many scoring functions and algorithms tackle the problem, the typically high computational cost of permutation testing required to establish the p-value for the observed pattern presents a major practical obstacle. To address this problem, we here extend the recently proposed CTD (“Connect the Dots”) approach to establish information-theoretic upper bounds on the p-values and lower bounds on the size and connectedness of communities that are detectable. This is an innovation on the applicability of CTD, broadening its use to pairs of graphs. MDPI 2022-09-21 /pmc/articles/PMC9601153/ /pubmed/37420347 http://dx.doi.org/10.3390/e24101329 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Obradovic, Predrag Kovačević, Vladimir Li, Xiqi Milosavljevic, Aleksandar An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs |
title | An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs |
title_full | An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs |
title_fullStr | An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs |
title_full_unstemmed | An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs |
title_short | An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs |
title_sort | information-theoretic bound on p-values for detecting communities shared between weighted labeled graphs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601153/ https://www.ncbi.nlm.nih.gov/pubmed/37420347 http://dx.doi.org/10.3390/e24101329 |
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