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A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants
Actinidiaceae, an economically important plant family, includes the Actinidia, Clematoclethra and Saurauia genus. Kiwifruit, with remarkably high vitamin C content, is an endemic species widely distributed in China with high economic value. Although many Actinidiaceae chloroplast genomes have been r...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601400/ https://www.ncbi.nlm.nih.gov/pubmed/36292711 http://dx.doi.org/10.3390/genes13101827 |
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author | Yang, Jun Ling, Chengcheng Zhang, Huamin Hussain, Quaid Lyu, Shiheng Zheng, Guohua Liu, Yongsheng |
author_facet | Yang, Jun Ling, Chengcheng Zhang, Huamin Hussain, Quaid Lyu, Shiheng Zheng, Guohua Liu, Yongsheng |
author_sort | Yang, Jun |
collection | PubMed |
description | Actinidiaceae, an economically important plant family, includes the Actinidia, Clematoclethra and Saurauia genus. Kiwifruit, with remarkably high vitamin C content, is an endemic species widely distributed in China with high economic value. Although many Actinidiaceae chloroplast genomes have been reported, few complete mitogenomes of Actinidiaceae have been studied. Here, complete circular mitogenomes of the four kiwifruit species and Saurauia tristyla were assembled. Codon usage, sequence repeats, RNA editing, gene transfers, selective pressure, and phylogenetic relationships in the four kiwifruit species and S. tristyla were comparatively analyzed. This research will contribute to the study of phylogenetic relationships within Actiniaceae and molecular barcoding in kiwifruit. |
format | Online Article Text |
id | pubmed-9601400 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96014002022-10-27 A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants Yang, Jun Ling, Chengcheng Zhang, Huamin Hussain, Quaid Lyu, Shiheng Zheng, Guohua Liu, Yongsheng Genes (Basel) Article Actinidiaceae, an economically important plant family, includes the Actinidia, Clematoclethra and Saurauia genus. Kiwifruit, with remarkably high vitamin C content, is an endemic species widely distributed in China with high economic value. Although many Actinidiaceae chloroplast genomes have been reported, few complete mitogenomes of Actinidiaceae have been studied. Here, complete circular mitogenomes of the four kiwifruit species and Saurauia tristyla were assembled. Codon usage, sequence repeats, RNA editing, gene transfers, selective pressure, and phylogenetic relationships in the four kiwifruit species and S. tristyla were comparatively analyzed. This research will contribute to the study of phylogenetic relationships within Actiniaceae and molecular barcoding in kiwifruit. MDPI 2022-10-09 /pmc/articles/PMC9601400/ /pubmed/36292711 http://dx.doi.org/10.3390/genes13101827 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yang, Jun Ling, Chengcheng Zhang, Huamin Hussain, Quaid Lyu, Shiheng Zheng, Guohua Liu, Yongsheng A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants |
title | A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants |
title_full | A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants |
title_fullStr | A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants |
title_full_unstemmed | A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants |
title_short | A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants |
title_sort | comparative genomics approach for analysis of complete mitogenomes of five actinidiaceae plants |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601400/ https://www.ncbi.nlm.nih.gov/pubmed/36292711 http://dx.doi.org/10.3390/genes13101827 |
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