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A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants

Actinidiaceae, an economically important plant family, includes the Actinidia, Clematoclethra and Saurauia genus. Kiwifruit, with remarkably high vitamin C content, is an endemic species widely distributed in China with high economic value. Although many Actinidiaceae chloroplast genomes have been r...

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Detalles Bibliográficos
Autores principales: Yang, Jun, Ling, Chengcheng, Zhang, Huamin, Hussain, Quaid, Lyu, Shiheng, Zheng, Guohua, Liu, Yongsheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601400/
https://www.ncbi.nlm.nih.gov/pubmed/36292711
http://dx.doi.org/10.3390/genes13101827
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author Yang, Jun
Ling, Chengcheng
Zhang, Huamin
Hussain, Quaid
Lyu, Shiheng
Zheng, Guohua
Liu, Yongsheng
author_facet Yang, Jun
Ling, Chengcheng
Zhang, Huamin
Hussain, Quaid
Lyu, Shiheng
Zheng, Guohua
Liu, Yongsheng
author_sort Yang, Jun
collection PubMed
description Actinidiaceae, an economically important plant family, includes the Actinidia, Clematoclethra and Saurauia genus. Kiwifruit, with remarkably high vitamin C content, is an endemic species widely distributed in China with high economic value. Although many Actinidiaceae chloroplast genomes have been reported, few complete mitogenomes of Actinidiaceae have been studied. Here, complete circular mitogenomes of the four kiwifruit species and Saurauia tristyla were assembled. Codon usage, sequence repeats, RNA editing, gene transfers, selective pressure, and phylogenetic relationships in the four kiwifruit species and S. tristyla were comparatively analyzed. This research will contribute to the study of phylogenetic relationships within Actiniaceae and molecular barcoding in kiwifruit.
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spelling pubmed-96014002022-10-27 A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants Yang, Jun Ling, Chengcheng Zhang, Huamin Hussain, Quaid Lyu, Shiheng Zheng, Guohua Liu, Yongsheng Genes (Basel) Article Actinidiaceae, an economically important plant family, includes the Actinidia, Clematoclethra and Saurauia genus. Kiwifruit, with remarkably high vitamin C content, is an endemic species widely distributed in China with high economic value. Although many Actinidiaceae chloroplast genomes have been reported, few complete mitogenomes of Actinidiaceae have been studied. Here, complete circular mitogenomes of the four kiwifruit species and Saurauia tristyla were assembled. Codon usage, sequence repeats, RNA editing, gene transfers, selective pressure, and phylogenetic relationships in the four kiwifruit species and S. tristyla were comparatively analyzed. This research will contribute to the study of phylogenetic relationships within Actiniaceae and molecular barcoding in kiwifruit. MDPI 2022-10-09 /pmc/articles/PMC9601400/ /pubmed/36292711 http://dx.doi.org/10.3390/genes13101827 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yang, Jun
Ling, Chengcheng
Zhang, Huamin
Hussain, Quaid
Lyu, Shiheng
Zheng, Guohua
Liu, Yongsheng
A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants
title A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants
title_full A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants
title_fullStr A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants
title_full_unstemmed A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants
title_short A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants
title_sort comparative genomics approach for analysis of complete mitogenomes of five actinidiaceae plants
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601400/
https://www.ncbi.nlm.nih.gov/pubmed/36292711
http://dx.doi.org/10.3390/genes13101827
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