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Molecular Epidemiology in Amerindians of the Brazilian Amazon Reveals New Genetic Variants in DNA Repair Genes

Native American populations from the Brazilian Amazon have a low genetic diversity and a different genetic profile when compared to people from other continents. Despite this, few studies have been conducted in this group, and there is no description of their genetic data in the various currently ex...

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Autores principales: Cohen-Paes, Amanda de Nazaré, de Alcântara, Angélica Leite, Moreira, Fabiano Cordeiro, Fernandes, Marianne Rodrigues, Pantoja, Karla Beatriz Cardias Cereja, de Carvalho, Darlen Cardoso, Guerreiro, João Farias, Ribeiro-dos-Santos, Ândrea, dos Santos, Sidney Emanuel Batista, de Assumpção, Paulo Pimentel, dos Santos, Ney Pereira Carneiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601515/
https://www.ncbi.nlm.nih.gov/pubmed/36292754
http://dx.doi.org/10.3390/genes13101869
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author Cohen-Paes, Amanda de Nazaré
de Alcântara, Angélica Leite
Moreira, Fabiano Cordeiro
Fernandes, Marianne Rodrigues
Pantoja, Karla Beatriz Cardias Cereja
de Carvalho, Darlen Cardoso
Guerreiro, João Farias
Ribeiro-dos-Santos, Ândrea
dos Santos, Sidney Emanuel Batista
de Assumpção, Paulo Pimentel
dos Santos, Ney Pereira Carneiro
author_facet Cohen-Paes, Amanda de Nazaré
de Alcântara, Angélica Leite
Moreira, Fabiano Cordeiro
Fernandes, Marianne Rodrigues
Pantoja, Karla Beatriz Cardias Cereja
de Carvalho, Darlen Cardoso
Guerreiro, João Farias
Ribeiro-dos-Santos, Ândrea
dos Santos, Sidney Emanuel Batista
de Assumpção, Paulo Pimentel
dos Santos, Ney Pereira Carneiro
author_sort Cohen-Paes, Amanda de Nazaré
collection PubMed
description Native American populations from the Brazilian Amazon have a low genetic diversity and a different genetic profile when compared to people from other continents. Despite this, few studies have been conducted in this group, and there is no description of their genetic data in the various currently existent international databases. The characterization of the genomic profile of a population not only has an impact in studies of population genetics, but also helps to advance diagnostic and therapeutic response studies, leading to the optimization of clinical applicability. Genetic variations in DNA repair genes have been associated with the modulation of susceptibility to various pathologies, as well as in their prognosis and therapy. This is the first study to investigate DNA repair genes in Amerindians from the Brazilian Amazon region. We investigated 13 important DNA repair genes in the exome of 63 Native Americans, comparing our results with those found in 5 continental populations, whose data are available in the Genome Aggregation Database. Our results showed that 57 variants already described in literature were differentially distributed in the Amerindian populations in relation to the continental populations, 7 of which have significant clinical relevance. In addition, 9 new variants were described, suggesting that they are unique to these populations. Our study reinforces the understanding that the Amazonian Native American population presents a unique genetic profile, and our findings may collaborate with the creation of public policies that optimize the quality of life of these groups as well as the Brazilian population, which presents a high degree of interethnic mixing with Amerindian groups.
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spelling pubmed-96015152022-10-27 Molecular Epidemiology in Amerindians of the Brazilian Amazon Reveals New Genetic Variants in DNA Repair Genes Cohen-Paes, Amanda de Nazaré de Alcântara, Angélica Leite Moreira, Fabiano Cordeiro Fernandes, Marianne Rodrigues Pantoja, Karla Beatriz Cardias Cereja de Carvalho, Darlen Cardoso Guerreiro, João Farias Ribeiro-dos-Santos, Ândrea dos Santos, Sidney Emanuel Batista de Assumpção, Paulo Pimentel dos Santos, Ney Pereira Carneiro Genes (Basel) Article Native American populations from the Brazilian Amazon have a low genetic diversity and a different genetic profile when compared to people from other continents. Despite this, few studies have been conducted in this group, and there is no description of their genetic data in the various currently existent international databases. The characterization of the genomic profile of a population not only has an impact in studies of population genetics, but also helps to advance diagnostic and therapeutic response studies, leading to the optimization of clinical applicability. Genetic variations in DNA repair genes have been associated with the modulation of susceptibility to various pathologies, as well as in their prognosis and therapy. This is the first study to investigate DNA repair genes in Amerindians from the Brazilian Amazon region. We investigated 13 important DNA repair genes in the exome of 63 Native Americans, comparing our results with those found in 5 continental populations, whose data are available in the Genome Aggregation Database. Our results showed that 57 variants already described in literature were differentially distributed in the Amerindian populations in relation to the continental populations, 7 of which have significant clinical relevance. In addition, 9 new variants were described, suggesting that they are unique to these populations. Our study reinforces the understanding that the Amazonian Native American population presents a unique genetic profile, and our findings may collaborate with the creation of public policies that optimize the quality of life of these groups as well as the Brazilian population, which presents a high degree of interethnic mixing with Amerindian groups. MDPI 2022-10-15 /pmc/articles/PMC9601515/ /pubmed/36292754 http://dx.doi.org/10.3390/genes13101869 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cohen-Paes, Amanda de Nazaré
de Alcântara, Angélica Leite
Moreira, Fabiano Cordeiro
Fernandes, Marianne Rodrigues
Pantoja, Karla Beatriz Cardias Cereja
de Carvalho, Darlen Cardoso
Guerreiro, João Farias
Ribeiro-dos-Santos, Ândrea
dos Santos, Sidney Emanuel Batista
de Assumpção, Paulo Pimentel
dos Santos, Ney Pereira Carneiro
Molecular Epidemiology in Amerindians of the Brazilian Amazon Reveals New Genetic Variants in DNA Repair Genes
title Molecular Epidemiology in Amerindians of the Brazilian Amazon Reveals New Genetic Variants in DNA Repair Genes
title_full Molecular Epidemiology in Amerindians of the Brazilian Amazon Reveals New Genetic Variants in DNA Repair Genes
title_fullStr Molecular Epidemiology in Amerindians of the Brazilian Amazon Reveals New Genetic Variants in DNA Repair Genes
title_full_unstemmed Molecular Epidemiology in Amerindians of the Brazilian Amazon Reveals New Genetic Variants in DNA Repair Genes
title_short Molecular Epidemiology in Amerindians of the Brazilian Amazon Reveals New Genetic Variants in DNA Repair Genes
title_sort molecular epidemiology in amerindians of the brazilian amazon reveals new genetic variants in dna repair genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601515/
https://www.ncbi.nlm.nih.gov/pubmed/36292754
http://dx.doi.org/10.3390/genes13101869
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