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Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium

As the epidemic of single‐use plastic worsens, it has become critical to identify fully renewable plastics such as those that can be degraded using enzymes. Here we describe the structure and biochemistry of an alkaline poly[(R)‐3‐hydroxybutyric acid] (PHB) depolymerase from the soil thermophile Lih...

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Autores principales: Thomas, Gwendell M., Quirk, Stephen, Huard, Dustin J. E., Lieberman, Raquel L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601781/
https://www.ncbi.nlm.nih.gov/pubmed/36222314
http://dx.doi.org/10.1002/pro.4470
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author Thomas, Gwendell M.
Quirk, Stephen
Huard, Dustin J. E.
Lieberman, Raquel L.
author_facet Thomas, Gwendell M.
Quirk, Stephen
Huard, Dustin J. E.
Lieberman, Raquel L.
author_sort Thomas, Gwendell M.
collection PubMed
description As the epidemic of single‐use plastic worsens, it has become critical to identify fully renewable plastics such as those that can be degraded using enzymes. Here we describe the structure and biochemistry of an alkaline poly[(R)‐3‐hydroxybutyric acid] (PHB) depolymerase from the soil thermophile Lihuaxuella thermophila. Like other PHB depolymerases or PHBases, the Lihuaxuella enzyme is active against several different polyhydroxyalkanoates, including homo‐ and heteropolymers, but L. thermophila PHB depolymerase (LtPHBase) is unique in that it also hydrolyzes polylactic acid and polycaprolactone. LtPHBase exhibits optimal activity at 70°C, and retains 88% of activity upon incubation at 65°C for 3 days. The 1.2 Å resolution crystal structure reveals an α/β‐hydrolase fold typical of PHBases, but with a shallow active site containing the catalytic Ser‐His‐Asp‐triad that appears poised for broad substrate specificity. LtPHBase holds promise for the depolymerization of PHB and related bioplastics at high temperature, as would be required in bioindustrial operations like recycling or landfill management.
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spelling pubmed-96017812022-10-27 Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium Thomas, Gwendell M. Quirk, Stephen Huard, Dustin J. E. Lieberman, Raquel L. Protein Sci Full‐length Papers As the epidemic of single‐use plastic worsens, it has become critical to identify fully renewable plastics such as those that can be degraded using enzymes. Here we describe the structure and biochemistry of an alkaline poly[(R)‐3‐hydroxybutyric acid] (PHB) depolymerase from the soil thermophile Lihuaxuella thermophila. Like other PHB depolymerases or PHBases, the Lihuaxuella enzyme is active against several different polyhydroxyalkanoates, including homo‐ and heteropolymers, but L. thermophila PHB depolymerase (LtPHBase) is unique in that it also hydrolyzes polylactic acid and polycaprolactone. LtPHBase exhibits optimal activity at 70°C, and retains 88% of activity upon incubation at 65°C for 3 days. The 1.2 Å resolution crystal structure reveals an α/β‐hydrolase fold typical of PHBases, but with a shallow active site containing the catalytic Ser‐His‐Asp‐triad that appears poised for broad substrate specificity. LtPHBase holds promise for the depolymerization of PHB and related bioplastics at high temperature, as would be required in bioindustrial operations like recycling or landfill management. John Wiley & Sons, Inc. 2022-10-26 2022-11 /pmc/articles/PMC9601781/ /pubmed/36222314 http://dx.doi.org/10.1002/pro.4470 Text en © 2022 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Full‐length Papers
Thomas, Gwendell M.
Quirk, Stephen
Huard, Dustin J. E.
Lieberman, Raquel L.
Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium
title Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium
title_full Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium
title_fullStr Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium
title_full_unstemmed Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium
title_short Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium
title_sort bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium
topic Full‐length Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601781/
https://www.ncbi.nlm.nih.gov/pubmed/36222314
http://dx.doi.org/10.1002/pro.4470
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