Cargando…
Entropy as a Geometrical Source of Information in Biological Organizations
Considering both biological and non-biological polygonal shape organizations, in this paper we introduce a quantitative method which is able to determine informational entropy as spatial differences between heterogeneity of internal areas from simulation and experimental samples. According to these...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601958/ https://www.ncbi.nlm.nih.gov/pubmed/37420408 http://dx.doi.org/10.3390/e24101390 |
_version_ | 1784817193668575232 |
---|---|
author | Lopez-Sauceda, Juan von Bülow, Philipp Ortega-Laurel, Carlos Perez-Martinez, Francisco Miranda-Perkins, Kalina Carrillo-González, José Gerardo |
author_facet | Lopez-Sauceda, Juan von Bülow, Philipp Ortega-Laurel, Carlos Perez-Martinez, Francisco Miranda-Perkins, Kalina Carrillo-González, José Gerardo |
author_sort | Lopez-Sauceda, Juan |
collection | PubMed |
description | Considering both biological and non-biological polygonal shape organizations, in this paper we introduce a quantitative method which is able to determine informational entropy as spatial differences between heterogeneity of internal areas from simulation and experimental samples. According to these data (i.e., heterogeneity), we are able to establish levels of informational entropy using statistical insights of spatial orders using discrete and continuous values. Given a particular state of entropy, we establish levels of information as a novel approach which can unveil general principles of biological organization. Thirty-five geometric aggregates are tested (biological, non-biological, and polygonal simulations) in order to obtain the theoretical and experimental results of their spatial heterogeneity. Geometrical aggregates (meshes) include a spectrum of organizations ranging from cell meshes to ecological patterns. Experimental results for discrete entropy using a bin width of 0.5 show that a particular range of informational entropy (0.08 to 0.27 bits) is intrinsically associated with low rates of heterogeneity, which indicates a high degree of uncertainty in finding non-homogeneous configurations. In contrast, differential entropy (continuous) results reflect negative entropy within a particular range (−0.4 to −0.9) for all bin widths. We conclude that the differential entropy of geometrical organizations is an important source of neglected information in biological systems. |
format | Online Article Text |
id | pubmed-9601958 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96019582022-10-27 Entropy as a Geometrical Source of Information in Biological Organizations Lopez-Sauceda, Juan von Bülow, Philipp Ortega-Laurel, Carlos Perez-Martinez, Francisco Miranda-Perkins, Kalina Carrillo-González, José Gerardo Entropy (Basel) Article Considering both biological and non-biological polygonal shape organizations, in this paper we introduce a quantitative method which is able to determine informational entropy as spatial differences between heterogeneity of internal areas from simulation and experimental samples. According to these data (i.e., heterogeneity), we are able to establish levels of informational entropy using statistical insights of spatial orders using discrete and continuous values. Given a particular state of entropy, we establish levels of information as a novel approach which can unveil general principles of biological organization. Thirty-five geometric aggregates are tested (biological, non-biological, and polygonal simulations) in order to obtain the theoretical and experimental results of their spatial heterogeneity. Geometrical aggregates (meshes) include a spectrum of organizations ranging from cell meshes to ecological patterns. Experimental results for discrete entropy using a bin width of 0.5 show that a particular range of informational entropy (0.08 to 0.27 bits) is intrinsically associated with low rates of heterogeneity, which indicates a high degree of uncertainty in finding non-homogeneous configurations. In contrast, differential entropy (continuous) results reflect negative entropy within a particular range (−0.4 to −0.9) for all bin widths. We conclude that the differential entropy of geometrical organizations is an important source of neglected information in biological systems. MDPI 2022-09-29 /pmc/articles/PMC9601958/ /pubmed/37420408 http://dx.doi.org/10.3390/e24101390 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Lopez-Sauceda, Juan von Bülow, Philipp Ortega-Laurel, Carlos Perez-Martinez, Francisco Miranda-Perkins, Kalina Carrillo-González, José Gerardo Entropy as a Geometrical Source of Information in Biological Organizations |
title | Entropy as a Geometrical Source of Information in Biological Organizations |
title_full | Entropy as a Geometrical Source of Information in Biological Organizations |
title_fullStr | Entropy as a Geometrical Source of Information in Biological Organizations |
title_full_unstemmed | Entropy as a Geometrical Source of Information in Biological Organizations |
title_short | Entropy as a Geometrical Source of Information in Biological Organizations |
title_sort | entropy as a geometrical source of information in biological organizations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9601958/ https://www.ncbi.nlm.nih.gov/pubmed/37420408 http://dx.doi.org/10.3390/e24101390 |
work_keys_str_mv | AT lopezsaucedajuan entropyasageometricalsourceofinformationinbiologicalorganizations AT vonbulowphilipp entropyasageometricalsourceofinformationinbiologicalorganizations AT ortegalaurelcarlos entropyasageometricalsourceofinformationinbiologicalorganizations AT perezmartinezfrancisco entropyasageometricalsourceofinformationinbiologicalorganizations AT mirandaperkinskalina entropyasageometricalsourceofinformationinbiologicalorganizations AT carrillogonzalezjosegerardo entropyasageometricalsourceofinformationinbiologicalorganizations |