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A Comparative Cross-Platform Analysis to Identify Potential Biomarker Genes for Evaluation of Teratozoospermia and Azoospermia

Male infertility is a global public health concern. Teratozoospermia is a qualitative anomaly of spermatozoa morphology, contributing significantly to male infertility, whereas azoospermia is the complete absence of spermatozoa in the ejaculate. Thus, there is a serious need for unveiling the common...

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Autores principales: Das, Suchismita, Guha, Pokhraj, Nath, Monika, Das, Sandipan, Sen, Surojit, Sahu, Jagajjit, Kopanska, Marta, Dutta, Sulagna, Jamal, Qazi Mohammad Sajid, Kesari, Kavindra Kumar, Sengupta, Pallav, Slama, Petr, Roychoudhury, Shubhadeep
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9602071/
https://www.ncbi.nlm.nih.gov/pubmed/36292606
http://dx.doi.org/10.3390/genes13101721
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author Das, Suchismita
Guha, Pokhraj
Nath, Monika
Das, Sandipan
Sen, Surojit
Sahu, Jagajjit
Kopanska, Marta
Dutta, Sulagna
Jamal, Qazi Mohammad Sajid
Kesari, Kavindra Kumar
Sengupta, Pallav
Slama, Petr
Roychoudhury, Shubhadeep
author_facet Das, Suchismita
Guha, Pokhraj
Nath, Monika
Das, Sandipan
Sen, Surojit
Sahu, Jagajjit
Kopanska, Marta
Dutta, Sulagna
Jamal, Qazi Mohammad Sajid
Kesari, Kavindra Kumar
Sengupta, Pallav
Slama, Petr
Roychoudhury, Shubhadeep
author_sort Das, Suchismita
collection PubMed
description Male infertility is a global public health concern. Teratozoospermia is a qualitative anomaly of spermatozoa morphology, contributing significantly to male infertility, whereas azoospermia is the complete absence of spermatozoa in the ejaculate. Thus, there is a serious need for unveiling the common origin and/or connection between both of these diseases, if any. This study aims to identify common potential biomarker genes of these two diseases via an in silico approach using a meta-analysis of microarray data. In this study, a differential expression analysis of genes was performed on four publicly available RNA microarray datasets, two each from teratozoospermia (GSE6872 and GSE6967) and azoospermia (GSE145467 and GSE25518). From the analysis, 118 DEGs were found to be common to teratozoospermia and azoospermia, and, interestingly, sperm autoantigenic protein 17 (SPA17) was found to possess the highest fold change value among all the DEGs (9.471), while coiled-coil domain-containing 90B (CCDC90B) and coiled-coil domain-containing 91 (CCDC91) genes were found to be common among three of analyses, i.e., Network Analyst, ExAtlas, and GEO2R. This observation indicates that SPA17, CCDC90B, and CCDC91 genes might have significant roles to play as potential biomarkers for teratozoospermia and azoospermia. Thus, our study opens a new window of research in this area and can provide an important theoretical basis for the diagnosis and treatment of both these diseases.
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spelling pubmed-96020712022-10-27 A Comparative Cross-Platform Analysis to Identify Potential Biomarker Genes for Evaluation of Teratozoospermia and Azoospermia Das, Suchismita Guha, Pokhraj Nath, Monika Das, Sandipan Sen, Surojit Sahu, Jagajjit Kopanska, Marta Dutta, Sulagna Jamal, Qazi Mohammad Sajid Kesari, Kavindra Kumar Sengupta, Pallav Slama, Petr Roychoudhury, Shubhadeep Genes (Basel) Article Male infertility is a global public health concern. Teratozoospermia is a qualitative anomaly of spermatozoa morphology, contributing significantly to male infertility, whereas azoospermia is the complete absence of spermatozoa in the ejaculate. Thus, there is a serious need for unveiling the common origin and/or connection between both of these diseases, if any. This study aims to identify common potential biomarker genes of these two diseases via an in silico approach using a meta-analysis of microarray data. In this study, a differential expression analysis of genes was performed on four publicly available RNA microarray datasets, two each from teratozoospermia (GSE6872 and GSE6967) and azoospermia (GSE145467 and GSE25518). From the analysis, 118 DEGs were found to be common to teratozoospermia and azoospermia, and, interestingly, sperm autoantigenic protein 17 (SPA17) was found to possess the highest fold change value among all the DEGs (9.471), while coiled-coil domain-containing 90B (CCDC90B) and coiled-coil domain-containing 91 (CCDC91) genes were found to be common among three of analyses, i.e., Network Analyst, ExAtlas, and GEO2R. This observation indicates that SPA17, CCDC90B, and CCDC91 genes might have significant roles to play as potential biomarkers for teratozoospermia and azoospermia. Thus, our study opens a new window of research in this area and can provide an important theoretical basis for the diagnosis and treatment of both these diseases. MDPI 2022-09-25 /pmc/articles/PMC9602071/ /pubmed/36292606 http://dx.doi.org/10.3390/genes13101721 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Das, Suchismita
Guha, Pokhraj
Nath, Monika
Das, Sandipan
Sen, Surojit
Sahu, Jagajjit
Kopanska, Marta
Dutta, Sulagna
Jamal, Qazi Mohammad Sajid
Kesari, Kavindra Kumar
Sengupta, Pallav
Slama, Petr
Roychoudhury, Shubhadeep
A Comparative Cross-Platform Analysis to Identify Potential Biomarker Genes for Evaluation of Teratozoospermia and Azoospermia
title A Comparative Cross-Platform Analysis to Identify Potential Biomarker Genes for Evaluation of Teratozoospermia and Azoospermia
title_full A Comparative Cross-Platform Analysis to Identify Potential Biomarker Genes for Evaluation of Teratozoospermia and Azoospermia
title_fullStr A Comparative Cross-Platform Analysis to Identify Potential Biomarker Genes for Evaluation of Teratozoospermia and Azoospermia
title_full_unstemmed A Comparative Cross-Platform Analysis to Identify Potential Biomarker Genes for Evaluation of Teratozoospermia and Azoospermia
title_short A Comparative Cross-Platform Analysis to Identify Potential Biomarker Genes for Evaluation of Teratozoospermia and Azoospermia
title_sort comparative cross-platform analysis to identify potential biomarker genes for evaluation of teratozoospermia and azoospermia
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9602071/
https://www.ncbi.nlm.nih.gov/pubmed/36292606
http://dx.doi.org/10.3390/genes13101721
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