Cargando…
Assessing and Evaluating the Scope and Constraints of Idylla Molecular Assays by Using Different Source Materials in Routine Diagnostic Settings
For cancer treatment, diagnostics concerning tumor type and determination of molecular markers in short TAT is critical. The fully automated, real-time PCR-based molecular diagnostic Idylla assays are well established in many laboratories for qualitative detection, short TAT and routine screening of...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604085/ https://www.ncbi.nlm.nih.gov/pubmed/36293374 http://dx.doi.org/10.3390/ijms232012515 |
_version_ | 1784817723709063168 |
---|---|
author | Boppudi, Sanga Mitra Scheil-Bertram, Stefanie Faust, Elisabeth Annamneedi, Anil Fisseler-Eckhoff, Annette |
author_facet | Boppudi, Sanga Mitra Scheil-Bertram, Stefanie Faust, Elisabeth Annamneedi, Anil Fisseler-Eckhoff, Annette |
author_sort | Boppudi, Sanga Mitra |
collection | PubMed |
description | For cancer treatment, diagnostics concerning tumor type and determination of molecular markers in short TAT is critical. The fully automated, real-time PCR-based molecular diagnostic Idylla assays are well established in many laboratories for qualitative detection, short TAT and routine screening of clinically relevant oncogenic mutations. According to the manufacturer, all IVD assays are recommended for use only with FFPE tissue samples of 5–10 µM dissections with at least 10% tumor content. In this study, we tested the performance and accuracy of the IVD assays along with the gene fusion assay (RUO) with different tissue/source materials like isolated DNA/RNA, cryomaterial, etc. The study also included testing archival FFPE tissue sections dating back from 20 years and a performance check for different pan-cancer samples individually. All the assays tested with FFPE sections and gDNA/RNA input showed above 96% accuracy and sensitivity, individually with 100% specificity. The Idylla assays also performed exceptionally well on the archival FFPE tissues, and the use of assays for other solid tumors was also remarkable. The performance test and accuracy of Idylla assays showed high efficiency with certain limitations. For the use of Idylla assays, both qualitative and quantitative applicability of different tumor source materials could produce efficient results in different diagnostic settings within a short TAT. |
format | Online Article Text |
id | pubmed-9604085 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96040852022-10-27 Assessing and Evaluating the Scope and Constraints of Idylla Molecular Assays by Using Different Source Materials in Routine Diagnostic Settings Boppudi, Sanga Mitra Scheil-Bertram, Stefanie Faust, Elisabeth Annamneedi, Anil Fisseler-Eckhoff, Annette Int J Mol Sci Article For cancer treatment, diagnostics concerning tumor type and determination of molecular markers in short TAT is critical. The fully automated, real-time PCR-based molecular diagnostic Idylla assays are well established in many laboratories for qualitative detection, short TAT and routine screening of clinically relevant oncogenic mutations. According to the manufacturer, all IVD assays are recommended for use only with FFPE tissue samples of 5–10 µM dissections with at least 10% tumor content. In this study, we tested the performance and accuracy of the IVD assays along with the gene fusion assay (RUO) with different tissue/source materials like isolated DNA/RNA, cryomaterial, etc. The study also included testing archival FFPE tissue sections dating back from 20 years and a performance check for different pan-cancer samples individually. All the assays tested with FFPE sections and gDNA/RNA input showed above 96% accuracy and sensitivity, individually with 100% specificity. The Idylla assays also performed exceptionally well on the archival FFPE tissues, and the use of assays for other solid tumors was also remarkable. The performance test and accuracy of Idylla assays showed high efficiency with certain limitations. For the use of Idylla assays, both qualitative and quantitative applicability of different tumor source materials could produce efficient results in different diagnostic settings within a short TAT. MDPI 2022-10-19 /pmc/articles/PMC9604085/ /pubmed/36293374 http://dx.doi.org/10.3390/ijms232012515 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Boppudi, Sanga Mitra Scheil-Bertram, Stefanie Faust, Elisabeth Annamneedi, Anil Fisseler-Eckhoff, Annette Assessing and Evaluating the Scope and Constraints of Idylla Molecular Assays by Using Different Source Materials in Routine Diagnostic Settings |
title | Assessing and Evaluating the Scope and Constraints of Idylla Molecular Assays by Using Different Source Materials in Routine Diagnostic Settings |
title_full | Assessing and Evaluating the Scope and Constraints of Idylla Molecular Assays by Using Different Source Materials in Routine Diagnostic Settings |
title_fullStr | Assessing and Evaluating the Scope and Constraints of Idylla Molecular Assays by Using Different Source Materials in Routine Diagnostic Settings |
title_full_unstemmed | Assessing and Evaluating the Scope and Constraints of Idylla Molecular Assays by Using Different Source Materials in Routine Diagnostic Settings |
title_short | Assessing and Evaluating the Scope and Constraints of Idylla Molecular Assays by Using Different Source Materials in Routine Diagnostic Settings |
title_sort | assessing and evaluating the scope and constraints of idylla molecular assays by using different source materials in routine diagnostic settings |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604085/ https://www.ncbi.nlm.nih.gov/pubmed/36293374 http://dx.doi.org/10.3390/ijms232012515 |
work_keys_str_mv | AT boppudisangamitra assessingandevaluatingthescopeandconstraintsofidyllamolecularassaysbyusingdifferentsourcematerialsinroutinediagnosticsettings AT scheilbertramstefanie assessingandevaluatingthescopeandconstraintsofidyllamolecularassaysbyusingdifferentsourcematerialsinroutinediagnosticsettings AT faustelisabeth assessingandevaluatingthescopeandconstraintsofidyllamolecularassaysbyusingdifferentsourcematerialsinroutinediagnosticsettings AT annamneedianil assessingandevaluatingthescopeandconstraintsofidyllamolecularassaysbyusingdifferentsourcematerialsinroutinediagnosticsettings AT fisselereckhoffannette assessingandevaluatingthescopeandconstraintsofidyllamolecularassaysbyusingdifferentsourcematerialsinroutinediagnosticsettings |