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A Perspective on the (Rise and Fall of) Protein β-Turns
The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-turns were described more than 50 years ago and account for more than 20% of protein residues. Nonetheless, they are often overlooked or even misunderstood. This poor knowledge of these local protein conform...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604201/ https://www.ncbi.nlm.nih.gov/pubmed/36293166 http://dx.doi.org/10.3390/ijms232012314 |
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author | de Brevern, Alexandre G. |
author_facet | de Brevern, Alexandre G. |
author_sort | de Brevern, Alexandre G. |
collection | PubMed |
description | The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-turns were described more than 50 years ago and account for more than 20% of protein residues. Nonetheless, they are often overlooked or even misunderstood. This poor knowledge of these local protein conformations is due to various factors, causes that I discuss here. For example, confusion still exists about the assignment of these local protein structures, their overlaps with other structures, the potential absence of a stabilizing hydrogen bond, the numerous types of β-turns and the software’s difficulty in assigning or visualizing them. I also propose some ideas to potentially/partially remedy this and present why β-turns can still be helpful, even in the AlphaFold 2 era. |
format | Online Article Text |
id | pubmed-9604201 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96042012022-10-27 A Perspective on the (Rise and Fall of) Protein β-Turns de Brevern, Alexandre G. Int J Mol Sci Review The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-turns were described more than 50 years ago and account for more than 20% of protein residues. Nonetheless, they are often overlooked or even misunderstood. This poor knowledge of these local protein conformations is due to various factors, causes that I discuss here. For example, confusion still exists about the assignment of these local protein structures, their overlaps with other structures, the potential absence of a stabilizing hydrogen bond, the numerous types of β-turns and the software’s difficulty in assigning or visualizing them. I also propose some ideas to potentially/partially remedy this and present why β-turns can still be helpful, even in the AlphaFold 2 era. MDPI 2022-10-14 /pmc/articles/PMC9604201/ /pubmed/36293166 http://dx.doi.org/10.3390/ijms232012314 Text en © 2022 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review de Brevern, Alexandre G. A Perspective on the (Rise and Fall of) Protein β-Turns |
title | A Perspective on the (Rise and Fall of) Protein β-Turns |
title_full | A Perspective on the (Rise and Fall of) Protein β-Turns |
title_fullStr | A Perspective on the (Rise and Fall of) Protein β-Turns |
title_full_unstemmed | A Perspective on the (Rise and Fall of) Protein β-Turns |
title_short | A Perspective on the (Rise and Fall of) Protein β-Turns |
title_sort | perspective on the (rise and fall of) protein β-turns |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604201/ https://www.ncbi.nlm.nih.gov/pubmed/36293166 http://dx.doi.org/10.3390/ijms232012314 |
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