Cargando…

A Perspective on the (Rise and Fall of) Protein β-Turns

The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-turns were described more than 50 years ago and account for more than 20% of protein residues. Nonetheless, they are often overlooked or even misunderstood. This poor knowledge of these local protein conform...

Descripción completa

Detalles Bibliográficos
Autor principal: de Brevern, Alexandre G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604201/
https://www.ncbi.nlm.nih.gov/pubmed/36293166
http://dx.doi.org/10.3390/ijms232012314
_version_ 1784817754023395328
author de Brevern, Alexandre G.
author_facet de Brevern, Alexandre G.
author_sort de Brevern, Alexandre G.
collection PubMed
description The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-turns were described more than 50 years ago and account for more than 20% of protein residues. Nonetheless, they are often overlooked or even misunderstood. This poor knowledge of these local protein conformations is due to various factors, causes that I discuss here. For example, confusion still exists about the assignment of these local protein structures, their overlaps with other structures, the potential absence of a stabilizing hydrogen bond, the numerous types of β-turns and the software’s difficulty in assigning or visualizing them. I also propose some ideas to potentially/partially remedy this and present why β-turns can still be helpful, even in the AlphaFold 2 era.
format Online
Article
Text
id pubmed-9604201
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-96042012022-10-27 A Perspective on the (Rise and Fall of) Protein β-Turns de Brevern, Alexandre G. Int J Mol Sci Review The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-turns were described more than 50 years ago and account for more than 20% of protein residues. Nonetheless, they are often overlooked or even misunderstood. This poor knowledge of these local protein conformations is due to various factors, causes that I discuss here. For example, confusion still exists about the assignment of these local protein structures, their overlaps with other structures, the potential absence of a stabilizing hydrogen bond, the numerous types of β-turns and the software’s difficulty in assigning or visualizing them. I also propose some ideas to potentially/partially remedy this and present why β-turns can still be helpful, even in the AlphaFold 2 era. MDPI 2022-10-14 /pmc/articles/PMC9604201/ /pubmed/36293166 http://dx.doi.org/10.3390/ijms232012314 Text en © 2022 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
de Brevern, Alexandre G.
A Perspective on the (Rise and Fall of) Protein β-Turns
title A Perspective on the (Rise and Fall of) Protein β-Turns
title_full A Perspective on the (Rise and Fall of) Protein β-Turns
title_fullStr A Perspective on the (Rise and Fall of) Protein β-Turns
title_full_unstemmed A Perspective on the (Rise and Fall of) Protein β-Turns
title_short A Perspective on the (Rise and Fall of) Protein β-Turns
title_sort perspective on the (rise and fall of) protein β-turns
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604201/
https://www.ncbi.nlm.nih.gov/pubmed/36293166
http://dx.doi.org/10.3390/ijms232012314
work_keys_str_mv AT debrevernalexandreg aperspectiveontheriseandfallofproteinbturns
AT debrevernalexandreg perspectiveontheriseandfallofproteinbturns