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Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
GATA is a transcription factor that exerts a vital function in plant growth and development, physiological metabolism, and environmental responses. However, the GATA gene family has rarely been studied in Tartary buckwheat since the completion of its genome. This study used bioinformatics methods to...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604459/ https://www.ncbi.nlm.nih.gov/pubmed/36293290 http://dx.doi.org/10.3390/ijms232012434 |
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author | Yao, Xin Zhou, Meiliang Ruan, Jingjun He, Ailing Ma, Chao Wu, Weijiao Lai, Dili Fan, Yu Gao, Anjing Weng, Wenfeng Cheng, Jianping |
author_facet | Yao, Xin Zhou, Meiliang Ruan, Jingjun He, Ailing Ma, Chao Wu, Weijiao Lai, Dili Fan, Yu Gao, Anjing Weng, Wenfeng Cheng, Jianping |
author_sort | Yao, Xin |
collection | PubMed |
description | GATA is a transcription factor that exerts a vital function in plant growth and development, physiological metabolism, and environmental responses. However, the GATA gene family has rarely been studied in Tartary buckwheat since the completion of its genome. This study used bioinformatics methods to identify GATA genes of Tartary buckwheat and to analyze their subfamily classification, structural composition, and developmental evolution, as well as to discuss the expression patterns of FtGATA genes in different subfamilies. The twenty-eight identified FtGATA genes in the Tartary buckwheat genome were divided into four subfamilies and distributed on eight chromosomes. One pair of tandem repeat genes and eight pairs of fragments were found in chromosome mapping. Spatiotemporal expression patterns of eight FtGATA genes in different subfamilies indicated that the FtGATA gene family has regulatory roles in tissue specificity, fruit development, abiotic stress, and hormonal responses. This study creates a theoretical and scientific foundation for further research on the evolutionary relationship and biological function of FtGATA. |
format | Online Article Text |
id | pubmed-9604459 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96044592022-10-27 Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) Yao, Xin Zhou, Meiliang Ruan, Jingjun He, Ailing Ma, Chao Wu, Weijiao Lai, Dili Fan, Yu Gao, Anjing Weng, Wenfeng Cheng, Jianping Int J Mol Sci Article GATA is a transcription factor that exerts a vital function in plant growth and development, physiological metabolism, and environmental responses. However, the GATA gene family has rarely been studied in Tartary buckwheat since the completion of its genome. This study used bioinformatics methods to identify GATA genes of Tartary buckwheat and to analyze their subfamily classification, structural composition, and developmental evolution, as well as to discuss the expression patterns of FtGATA genes in different subfamilies. The twenty-eight identified FtGATA genes in the Tartary buckwheat genome were divided into four subfamilies and distributed on eight chromosomes. One pair of tandem repeat genes and eight pairs of fragments were found in chromosome mapping. Spatiotemporal expression patterns of eight FtGATA genes in different subfamilies indicated that the FtGATA gene family has regulatory roles in tissue specificity, fruit development, abiotic stress, and hormonal responses. This study creates a theoretical and scientific foundation for further research on the evolutionary relationship and biological function of FtGATA. MDPI 2022-10-17 /pmc/articles/PMC9604459/ /pubmed/36293290 http://dx.doi.org/10.3390/ijms232012434 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yao, Xin Zhou, Meiliang Ruan, Jingjun He, Ailing Ma, Chao Wu, Weijiao Lai, Dili Fan, Yu Gao, Anjing Weng, Wenfeng Cheng, Jianping Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) |
title | Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) |
title_full | Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) |
title_fullStr | Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) |
title_full_unstemmed | Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) |
title_short | Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) |
title_sort | genome-wide identification, evolution, and expression pattern analysis of the gata gene family in tartary buckwheat (fagopyrum tataricum) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604459/ https://www.ncbi.nlm.nih.gov/pubmed/36293290 http://dx.doi.org/10.3390/ijms232012434 |
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