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Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)

GATA is a transcription factor that exerts a vital function in plant growth and development, physiological metabolism, and environmental responses. However, the GATA gene family has rarely been studied in Tartary buckwheat since the completion of its genome. This study used bioinformatics methods to...

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Autores principales: Yao, Xin, Zhou, Meiliang, Ruan, Jingjun, He, Ailing, Ma, Chao, Wu, Weijiao, Lai, Dili, Fan, Yu, Gao, Anjing, Weng, Wenfeng, Cheng, Jianping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604459/
https://www.ncbi.nlm.nih.gov/pubmed/36293290
http://dx.doi.org/10.3390/ijms232012434
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author Yao, Xin
Zhou, Meiliang
Ruan, Jingjun
He, Ailing
Ma, Chao
Wu, Weijiao
Lai, Dili
Fan, Yu
Gao, Anjing
Weng, Wenfeng
Cheng, Jianping
author_facet Yao, Xin
Zhou, Meiliang
Ruan, Jingjun
He, Ailing
Ma, Chao
Wu, Weijiao
Lai, Dili
Fan, Yu
Gao, Anjing
Weng, Wenfeng
Cheng, Jianping
author_sort Yao, Xin
collection PubMed
description GATA is a transcription factor that exerts a vital function in plant growth and development, physiological metabolism, and environmental responses. However, the GATA gene family has rarely been studied in Tartary buckwheat since the completion of its genome. This study used bioinformatics methods to identify GATA genes of Tartary buckwheat and to analyze their subfamily classification, structural composition, and developmental evolution, as well as to discuss the expression patterns of FtGATA genes in different subfamilies. The twenty-eight identified FtGATA genes in the Tartary buckwheat genome were divided into four subfamilies and distributed on eight chromosomes. One pair of tandem repeat genes and eight pairs of fragments were found in chromosome mapping. Spatiotemporal expression patterns of eight FtGATA genes in different subfamilies indicated that the FtGATA gene family has regulatory roles in tissue specificity, fruit development, abiotic stress, and hormonal responses. This study creates a theoretical and scientific foundation for further research on the evolutionary relationship and biological function of FtGATA.
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spelling pubmed-96044592022-10-27 Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) Yao, Xin Zhou, Meiliang Ruan, Jingjun He, Ailing Ma, Chao Wu, Weijiao Lai, Dili Fan, Yu Gao, Anjing Weng, Wenfeng Cheng, Jianping Int J Mol Sci Article GATA is a transcription factor that exerts a vital function in plant growth and development, physiological metabolism, and environmental responses. However, the GATA gene family has rarely been studied in Tartary buckwheat since the completion of its genome. This study used bioinformatics methods to identify GATA genes of Tartary buckwheat and to analyze their subfamily classification, structural composition, and developmental evolution, as well as to discuss the expression patterns of FtGATA genes in different subfamilies. The twenty-eight identified FtGATA genes in the Tartary buckwheat genome were divided into four subfamilies and distributed on eight chromosomes. One pair of tandem repeat genes and eight pairs of fragments were found in chromosome mapping. Spatiotemporal expression patterns of eight FtGATA genes in different subfamilies indicated that the FtGATA gene family has regulatory roles in tissue specificity, fruit development, abiotic stress, and hormonal responses. This study creates a theoretical and scientific foundation for further research on the evolutionary relationship and biological function of FtGATA. MDPI 2022-10-17 /pmc/articles/PMC9604459/ /pubmed/36293290 http://dx.doi.org/10.3390/ijms232012434 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yao, Xin
Zhou, Meiliang
Ruan, Jingjun
He, Ailing
Ma, Chao
Wu, Weijiao
Lai, Dili
Fan, Yu
Gao, Anjing
Weng, Wenfeng
Cheng, Jianping
Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
title Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
title_full Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
title_fullStr Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
title_full_unstemmed Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
title_short Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
title_sort genome-wide identification, evolution, and expression pattern analysis of the gata gene family in tartary buckwheat (fagopyrum tataricum)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604459/
https://www.ncbi.nlm.nih.gov/pubmed/36293290
http://dx.doi.org/10.3390/ijms232012434
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