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MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application
Trichophyton indotineae is an emerging pathogen which recently spread from India to Europe and that is more prone than other species of the Trichophyton mentagrophytes complex to show resistance to terbinafine, resulting in the necessity of rapid identification. Here, we improved the online MSI-2 MA...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604624/ https://www.ncbi.nlm.nih.gov/pubmed/36294668 http://dx.doi.org/10.3390/jof8101103 |
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author | Normand, Anne-Cécile Moreno-Sabater, Alicia Jabet, Arnaud Hamane, Samia Cremer, Geneviève Foulet, Françoise Blaize, Marion Dellière, Sarah Bonnal, Christine Imbert, Sébastien Brun, Sophie Packeu, Ann Bretagne, Stéphane Piarroux, Renaud |
author_facet | Normand, Anne-Cécile Moreno-Sabater, Alicia Jabet, Arnaud Hamane, Samia Cremer, Geneviève Foulet, Françoise Blaize, Marion Dellière, Sarah Bonnal, Christine Imbert, Sébastien Brun, Sophie Packeu, Ann Bretagne, Stéphane Piarroux, Renaud |
author_sort | Normand, Anne-Cécile |
collection | PubMed |
description | Trichophyton indotineae is an emerging pathogen which recently spread from India to Europe and that is more prone than other species of the Trichophyton mentagrophytes complex to show resistance to terbinafine, resulting in the necessity of rapid identification. Here, we improved the online MSI-2 MALDI-TOF identification tool in order to identify T. indotineae. By multiplying the culture conditions (2 culture media and 6 stages of growth) prior to protein extractions for both test isolates and reference strains, we added 142 references corresponding to 12 strains inside the T. mentagrophytes complex in the online MSI-2 database, of which 3 are T. indotineae strains. The resulting database was tested with 1566 spectra of 67 isolates from the T. mentagrophytes complex, including 16 T. indotineae isolates. Using the newly improved MSI-2 database, we increased the identification rate of T. indotineae from 5% to 96%, with a sensitivity of 99.6%. We also identified specific peaks (6834/6845 daltons and 10,634/10,680 daltons) allowing for the distinction of T. indotineae from the other species of the complex. Our improved version of the MSI-2 application allows for the identification of T. indotineae. This will improve the epidemiological knowledge of the spread of this species throughout the world and will help to improve patient care. |
format | Online Article Text |
id | pubmed-9604624 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96046242022-10-27 MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application Normand, Anne-Cécile Moreno-Sabater, Alicia Jabet, Arnaud Hamane, Samia Cremer, Geneviève Foulet, Françoise Blaize, Marion Dellière, Sarah Bonnal, Christine Imbert, Sébastien Brun, Sophie Packeu, Ann Bretagne, Stéphane Piarroux, Renaud J Fungi (Basel) Article Trichophyton indotineae is an emerging pathogen which recently spread from India to Europe and that is more prone than other species of the Trichophyton mentagrophytes complex to show resistance to terbinafine, resulting in the necessity of rapid identification. Here, we improved the online MSI-2 MALDI-TOF identification tool in order to identify T. indotineae. By multiplying the culture conditions (2 culture media and 6 stages of growth) prior to protein extractions for both test isolates and reference strains, we added 142 references corresponding to 12 strains inside the T. mentagrophytes complex in the online MSI-2 database, of which 3 are T. indotineae strains. The resulting database was tested with 1566 spectra of 67 isolates from the T. mentagrophytes complex, including 16 T. indotineae isolates. Using the newly improved MSI-2 database, we increased the identification rate of T. indotineae from 5% to 96%, with a sensitivity of 99.6%. We also identified specific peaks (6834/6845 daltons and 10,634/10,680 daltons) allowing for the distinction of T. indotineae from the other species of the complex. Our improved version of the MSI-2 application allows for the identification of T. indotineae. This will improve the epidemiological knowledge of the spread of this species throughout the world and will help to improve patient care. MDPI 2022-10-19 /pmc/articles/PMC9604624/ /pubmed/36294668 http://dx.doi.org/10.3390/jof8101103 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Normand, Anne-Cécile Moreno-Sabater, Alicia Jabet, Arnaud Hamane, Samia Cremer, Geneviève Foulet, Françoise Blaize, Marion Dellière, Sarah Bonnal, Christine Imbert, Sébastien Brun, Sophie Packeu, Ann Bretagne, Stéphane Piarroux, Renaud MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application |
title | MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application |
title_full | MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application |
title_fullStr | MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application |
title_full_unstemmed | MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application |
title_short | MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application |
title_sort | maldi-tof mass spectrometry online identification of trichophyton indotineae using the msi-2 application |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9604624/ https://www.ncbi.nlm.nih.gov/pubmed/36294668 http://dx.doi.org/10.3390/jof8101103 |
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