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Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma

Background: Solute carrier (SLC) family members are crucial in transporting amino acids across membranes. Amino acids are indispensable for both cancer and immune cells. However, the clinical significance of amino acid transporting SLC members in stomach adenocarcinoma (STAD) remains unclear. This s...

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Autores principales: Yu, Tao, Yu, Shao-kun, Lu, Kai-hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9606230/
https://www.ncbi.nlm.nih.gov/pubmed/36313898
http://dx.doi.org/10.3389/pore.2022.1610610
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author Yu, Tao
Yu, Shao-kun
Lu, Kai-hua
author_facet Yu, Tao
Yu, Shao-kun
Lu, Kai-hua
author_sort Yu, Tao
collection PubMed
description Background: Solute carrier (SLC) family members are crucial in transporting amino acids across membranes. Amino acids are indispensable for both cancer and immune cells. However, the clinical significance of amino acid transporting SLC members in stomach adenocarcinoma (STAD) remains unclear. This study aimed to develop an SLC family-based model to predict the prognosis and the response of STAD patients to immunotherapy. Methods: A total of 1239 tumor cases were obtained from online databases. The training set (n = 371) consisted of RNA sequencing profiles obtained from The Cancer Genome Atlas (TCGA), while those from Gene Expression Omnibus (GEO) were used as the test set. Subsequently, the clinical characteristics and immune profiles were investigated, and potential immunotherapy response prediction values of the model were assessed. Results: Based on the TCGA cohort, an SLC family-based model was developed using multivariate Cox analysis. All tumor cases were stratified into high- and low-risk groups considering the SLC model. High-risk patients had a worse overall survival (OS) than low-risk patients, consistent with the results of GEO cohorts. Comprehensive analyses revealed that the high-risk group was correlated with aggressiveness-related pathways, whereas the low-risk group had better T helper cell infiltration and stronger immunotherapy response. Compared to the high-risk group, the low-risk group presented increased PD-L1 and tumor mutation burden. Conclusion: This SLC family-based model has the potential to predict the prognosis and immunotherapy outcomes of STAD patients. The survival of patients in the low-risk group was greatly prolonged, and the patients may benefit more from immunotherapy.
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spelling pubmed-96062302022-10-28 Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma Yu, Tao Yu, Shao-kun Lu, Kai-hua Pathol Oncol Res Pathology and Oncology Archive Background: Solute carrier (SLC) family members are crucial in transporting amino acids across membranes. Amino acids are indispensable for both cancer and immune cells. However, the clinical significance of amino acid transporting SLC members in stomach adenocarcinoma (STAD) remains unclear. This study aimed to develop an SLC family-based model to predict the prognosis and the response of STAD patients to immunotherapy. Methods: A total of 1239 tumor cases were obtained from online databases. The training set (n = 371) consisted of RNA sequencing profiles obtained from The Cancer Genome Atlas (TCGA), while those from Gene Expression Omnibus (GEO) were used as the test set. Subsequently, the clinical characteristics and immune profiles were investigated, and potential immunotherapy response prediction values of the model were assessed. Results: Based on the TCGA cohort, an SLC family-based model was developed using multivariate Cox analysis. All tumor cases were stratified into high- and low-risk groups considering the SLC model. High-risk patients had a worse overall survival (OS) than low-risk patients, consistent with the results of GEO cohorts. Comprehensive analyses revealed that the high-risk group was correlated with aggressiveness-related pathways, whereas the low-risk group had better T helper cell infiltration and stronger immunotherapy response. Compared to the high-risk group, the low-risk group presented increased PD-L1 and tumor mutation burden. Conclusion: This SLC family-based model has the potential to predict the prognosis and immunotherapy outcomes of STAD patients. The survival of patients in the low-risk group was greatly prolonged, and the patients may benefit more from immunotherapy. Frontiers Media S.A. 2022-10-13 /pmc/articles/PMC9606230/ /pubmed/36313898 http://dx.doi.org/10.3389/pore.2022.1610610 Text en Copyright © 2022 Yu, Yu and Lu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pathology and Oncology Archive
Yu, Tao
Yu, Shao-kun
Lu, Kai-hua
Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma
title Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma
title_full Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma
title_fullStr Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma
title_full_unstemmed Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma
title_short Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma
title_sort comprehensive molecular analyses of an slc family-based model in stomach adenocarcinoma
topic Pathology and Oncology Archive
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9606230/
https://www.ncbi.nlm.nih.gov/pubmed/36313898
http://dx.doi.org/10.3389/pore.2022.1610610
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