Cargando…

Functional evaluation of LTR-derived lncRNAs in porcine oocytes and zygotes with RNA-seq and small RNA-seq

Long noncoding RNAs (lncRNAs) are increasingly being recognized as modulators of early embryonic development in mammals. However, they are seldom investigated in pigs. Here, to annotate full-length RNA transcripts, we performed annotation using a newly developed computational pipeline—an RNA-seq and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yang, Xu, Ji, Jingzhang, Cui, Hongdi, Zhao, Qi, Ding, Chunming, Xu, Chang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2022
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9606649/ https://www.ncbi.nlm.nih.gov/pubmed/36313467 http://dx.doi.org/10.3389/fgene.2022.1023041

Ejemplares similares

Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial Fibrillation
por: Wu, Dong-Mei, et al.
Publicado: (2019)

MicroRNAs Involved in Regulatory Cytoplasmic Male Sterility by Analysis RNA-seq and Small RNA-seq in Soybean
por: Zhang, Chunbao, et al.
Publicado: (2021)

Deep annotation of long noncoding RNAs by assembling RNA-seq and small RNA-seq data
por: Zhang, Jiaming, et al.
Publicado: (2023)

LncRNA–miRNA–mRNA Networks of Gastrointestinal Cancers Representing Common and Specific LncRNAs and mRNAs
por: Dastsooz, Hassan, et al.
Publicado: (2022)

Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava
por: Ding, Zehong, et al.
Publicado: (2019)

Defining lncRNAs Correlated with CHO Cell Growth and IgG Productivity by RNA-Seq
por: Vito, Davide, et al.
Publicado: (2019)

LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data
por: Jiang, Qinghua, et al.
Publicado: (2015)

Genome-wide analysis of differentially expressed lncRNAs and mRNAs in primary gonadotrophin adenomas by RNA-seq
por: Li, Jiye, et al.
Publicado: (2016)

Comprehensive Analysis of RNA-Seq in Endometriosis Reveals Competing Endogenous RNA Network Composed of circRNA, lncRNA and mRNA
por: Yin, Meichen, et al.
Publicado: (2022)

Polycystic Ovary Syndrome: Novel and Hub lncRNAs in the Insulin Resistance-Associated lncRNA–mRNA Network
por: Zhao, Jun, et al.
Publicado: (2019)

An integrative analysis of an lncRNA–mRNA competing endogenous RNA network to identify functional lncRNAs in uterine leiomyomas with RNA sequencing
por: Meng, Fanfei, et al.
Publicado: (2023)

Identifying Autophagy-Related lncRNAs and Potential ceRNA Networks in NAFLD
por: Cao, Ziyi, et al.
Publicado: (2022)

Construction of a ceRNA-based lncRNA–mRNA network to identify functional lncRNAs in premature ovarian insufficiency
por: Luo, Chao, et al.
Publicado: (2022)

RNA-seq analysis of potential lncRNAs for age-related hearing loss in a mouse model
por: Zhao, Tong, et al.
Publicado: (2020)

Reconstruction and Analysis of the lncRNA-miRNA-mRNA Network Based on Competitive Endogenous RNA Reveal Functional lncRNAs in Dilated Cardiomyopathy
por: Tao, Lichan, et al.
Publicado: (2019)

Identification of Key lncRNA–mRNA Pairs and Functional lncRNAs in Breast Cancer by Integrative Analysis of TCGA Data
por: Li, Zhe, et al.
Publicado: (2021)

Construction of ceRNA network based on RNA-seq for identifying prognostic lncRNA biomarkers in Perthes disease
por: Zhang, Tianjiu, et al.
Publicado: (2023)

Corrigendum: Reconstruction and Analysis of the lncRNA-miRNA-mRNA Network Based on Competitive Endogenous RNA Reveal Functional lncRNAs in Dilated Cardiomyopathy
por: Tao, Lichan, et al.
Publicado: (2022)

Identification of lncRNAs by RNA Sequencing Analysis During in Vivo Pre-Implantation Developmental Transformation in the Goat
por: Ling, Ying-hui, et al.
Publicado: (2019)

Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage
por: Song, Xiaoming, et al.
Publicado: (2016)

Identification of a RNA-Seq based prognostic signature with five lncRNAs for lung squamous cell carcinoma
por: Tang, Rui-Xue, et al.
Publicado: (2017)

Comprehensive Analysis of Differentially Expressed lncRNAs miRNAs and mRNA and Their ceRNA Network of Patients With Rare-Earth Pneumoconiosis
por: Shi, Xue-min, et al.
Publicado: (2021)

RNA-Seq Reveals the mRNAs, miRNAs, and lncRNAs Expression Profile of Knee Joint Synovial Tissue in Osteoarthritis Patients
por: Qiao, Linghui, et al.
Publicado: (2023)

Analysis of Differentially Expressed lncRNAs and mRNAs for the Identification of Hypoxia-Regulated Angiogenic Genes in Colorectal Cancer by RNA-Seq
por: Han, Yi, et al.
Publicado: (2019)

Identification of Functional lncRNAs Associated With Ovarian Endometriosis Based on a ceRNA Network
por: Bai, Jian, et al.
Publicado: (2021)

Construction and Characterization of a Synergistic lncRNA–miRNA Network Reveals a Crucial and Prognostic Role of lncRNAs in Colon Cancer
por: Zhao, Bin, et al.
Publicado: (2020)

Skin-Expressing lncRNAs in Inflammatory Responses
por: Shefler, Alanna, et al.
Publicado: (2022)

Single-Cell RNA-Seq and Bulk RNA-Seq Reveal Intratumoral Heterogeneity and Tumor Microenvironment Characteristics in Diffuse Large B-Cell Lymphoma
por: Zhao, Yang, et al.
Publicado: (2022)

Editorial: Applications of RNA-seq in cancer and tumor research
por: Lang, Jidong, et al.
Publicado: (2023)

Role of LncRNAs and CircRNAs in Bone Metabolism and Osteoporosis
por: Patil, Suryaji, et al.
Publicado: (2020)

SGII: Systematic Identification of Essential lncRNAs in Mouse and Human Genome With lncRNA-Protein-Protein Heterogeneous Interaction Network
por: Xin, Xiao-Hong, et al.
Publicado: (2022)

Identification of Hub mRNAs and lncRNAs in Atrial Fibrillation Using Weighted Co-expression Network Analysis With RNA-Seq Data
por: Yang, Pan, et al.
Publicado: (2021)

RNA-Seq Reveals the Roles of Long Non-Coding RNAs (lncRNAs) in Cashmere Fiber Production Performance of Cashmere Goats in China
por: Wu, Xinmiao, et al.
Publicado: (2023)

Using Pan RNA-Seq Analysis to Reveal the Ubiquitous Existence of 5′ and 3′ End Small RNAs
por: Xu, Xiaofeng, et al.
Publicado: (2019)

Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
por: Zheng, Jianfeng, et al.
Publicado: (2021)

UPA-seq: prediction of functional lncRNAs using differential sensitivity to UV crosslinking
por: Komatsu, Taiwa, et al.
Publicado: (2018)

Epigenetic Regulation of the Vascular Endothelium by Angiogenic LncRNAs
por: Subramaniam, Noeline, et al.
Publicado: (2021)

Expression of T cell-related lncRNAs in multiple sclerosis
por: Dadyar, Maryam, et al.
Publicado: (2022)

Improving RNA-Seq Precision with MapAl
por: Łabaj, Paweł P., et al.
Publicado: (2012)

RNA-Seq Perspectives to Improve Clinical Diagnosis
por: Marco-Puche, Guillermo, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_ivnoglap5d4qb2g4tnq39pe1g9