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Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics
Metabolite identification in non-targeted NMR-based metabolomics remains a challenge. While many peaks of frequently occurring metabolites are assigned, there is a high number of unknowns in high-resolution NMR spectra, hampering biological conclusions for biomarker analysis. Here, we use a cluster...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9607017/ https://www.ncbi.nlm.nih.gov/pubmed/36295894 http://dx.doi.org/10.3390/metabo12100992 |
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author | Heinzmann, Silke S. Waldenberger, Melanie Peters, Annette Schmitt-Kopplin, Philippe |
author_facet | Heinzmann, Silke S. Waldenberger, Melanie Peters, Annette Schmitt-Kopplin, Philippe |
author_sort | Heinzmann, Silke S. |
collection | PubMed |
description | Metabolite identification in non-targeted NMR-based metabolomics remains a challenge. While many peaks of frequently occurring metabolites are assigned, there is a high number of unknowns in high-resolution NMR spectra, hampering biological conclusions for biomarker analysis. Here, we use a cluster analysis approach to guide peak assignment via statistical correlations, which gives important information on possible structural and/or biological correlations from the NMR spectrum. Unknown peaks that cluster in close proximity to known peaks form hypotheses for their metabolite identities, thus, facilitating metabolite annotation. Subsequently, metabolite identification based on a database search, 2D NMR analysis and standard spiking is performed, whereas without a hypothesis, a full structural elucidation approach would be required. The approach allows a higher identification yield in NMR spectra, especially once pathway-related subclusters are identified. |
format | Online Article Text |
id | pubmed-9607017 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96070172022-10-28 Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics Heinzmann, Silke S. Waldenberger, Melanie Peters, Annette Schmitt-Kopplin, Philippe Metabolites Article Metabolite identification in non-targeted NMR-based metabolomics remains a challenge. While many peaks of frequently occurring metabolites are assigned, there is a high number of unknowns in high-resolution NMR spectra, hampering biological conclusions for biomarker analysis. Here, we use a cluster analysis approach to guide peak assignment via statistical correlations, which gives important information on possible structural and/or biological correlations from the NMR spectrum. Unknown peaks that cluster in close proximity to known peaks form hypotheses for their metabolite identities, thus, facilitating metabolite annotation. Subsequently, metabolite identification based on a database search, 2D NMR analysis and standard spiking is performed, whereas without a hypothesis, a full structural elucidation approach would be required. The approach allows a higher identification yield in NMR spectra, especially once pathway-related subclusters are identified. MDPI 2022-10-19 /pmc/articles/PMC9607017/ /pubmed/36295894 http://dx.doi.org/10.3390/metabo12100992 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Heinzmann, Silke S. Waldenberger, Melanie Peters, Annette Schmitt-Kopplin, Philippe Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics |
title | Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics |
title_full | Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics |
title_fullStr | Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics |
title_full_unstemmed | Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics |
title_short | Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics |
title_sort | cluster analysis statistical spectroscopy for the identification of metabolites in (1)h nmr metabolomics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9607017/ https://www.ncbi.nlm.nih.gov/pubmed/36295894 http://dx.doi.org/10.3390/metabo12100992 |
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