Cargando…

Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics

Metabolite identification in non-targeted NMR-based metabolomics remains a challenge. While many peaks of frequently occurring metabolites are assigned, there is a high number of unknowns in high-resolution NMR spectra, hampering biological conclusions for biomarker analysis. Here, we use a cluster...

Descripción completa

Detalles Bibliográficos
Autores principales: Heinzmann, Silke S., Waldenberger, Melanie, Peters, Annette, Schmitt-Kopplin, Philippe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9607017/
https://www.ncbi.nlm.nih.gov/pubmed/36295894
http://dx.doi.org/10.3390/metabo12100992
_version_ 1784818435863085056
author Heinzmann, Silke S.
Waldenberger, Melanie
Peters, Annette
Schmitt-Kopplin, Philippe
author_facet Heinzmann, Silke S.
Waldenberger, Melanie
Peters, Annette
Schmitt-Kopplin, Philippe
author_sort Heinzmann, Silke S.
collection PubMed
description Metabolite identification in non-targeted NMR-based metabolomics remains a challenge. While many peaks of frequently occurring metabolites are assigned, there is a high number of unknowns in high-resolution NMR spectra, hampering biological conclusions for biomarker analysis. Here, we use a cluster analysis approach to guide peak assignment via statistical correlations, which gives important information on possible structural and/or biological correlations from the NMR spectrum. Unknown peaks that cluster in close proximity to known peaks form hypotheses for their metabolite identities, thus, facilitating metabolite annotation. Subsequently, metabolite identification based on a database search, 2D NMR analysis and standard spiking is performed, whereas without a hypothesis, a full structural elucidation approach would be required. The approach allows a higher identification yield in NMR spectra, especially once pathway-related subclusters are identified.
format Online
Article
Text
id pubmed-9607017
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-96070172022-10-28 Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics Heinzmann, Silke S. Waldenberger, Melanie Peters, Annette Schmitt-Kopplin, Philippe Metabolites Article Metabolite identification in non-targeted NMR-based metabolomics remains a challenge. While many peaks of frequently occurring metabolites are assigned, there is a high number of unknowns in high-resolution NMR spectra, hampering biological conclusions for biomarker analysis. Here, we use a cluster analysis approach to guide peak assignment via statistical correlations, which gives important information on possible structural and/or biological correlations from the NMR spectrum. Unknown peaks that cluster in close proximity to known peaks form hypotheses for their metabolite identities, thus, facilitating metabolite annotation. Subsequently, metabolite identification based on a database search, 2D NMR analysis and standard spiking is performed, whereas without a hypothesis, a full structural elucidation approach would be required. The approach allows a higher identification yield in NMR spectra, especially once pathway-related subclusters are identified. MDPI 2022-10-19 /pmc/articles/PMC9607017/ /pubmed/36295894 http://dx.doi.org/10.3390/metabo12100992 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Heinzmann, Silke S.
Waldenberger, Melanie
Peters, Annette
Schmitt-Kopplin, Philippe
Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics
title Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics
title_full Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics
title_fullStr Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics
title_full_unstemmed Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics
title_short Cluster Analysis Statistical Spectroscopy for the Identification of Metabolites in (1)H NMR Metabolomics
title_sort cluster analysis statistical spectroscopy for the identification of metabolites in (1)h nmr metabolomics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9607017/
https://www.ncbi.nlm.nih.gov/pubmed/36295894
http://dx.doi.org/10.3390/metabo12100992
work_keys_str_mv AT heinzmannsilkes clusteranalysisstatisticalspectroscopyfortheidentificationofmetabolitesin1hnmrmetabolomics
AT waldenbergermelanie clusteranalysisstatisticalspectroscopyfortheidentificationofmetabolitesin1hnmrmetabolomics
AT petersannette clusteranalysisstatisticalspectroscopyfortheidentificationofmetabolitesin1hnmrmetabolomics
AT schmittkopplinphilippe clusteranalysisstatisticalspectroscopyfortheidentificationofmetabolitesin1hnmrmetabolomics