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Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance

Abundance estimation is a critical component of conservation planning, particularly for exploited species where managers set regulations to restrict harvest based on current population size. An increasingly common approach for abundance estimation is through integrated population modeling (IPM), whi...

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Autores principales: Gonnerman, Matthew, Linden, Daniel W., Shea, Stephanie A., Sullivan, Kelsey, Kamath, Pauline, Blomberg, Erik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9608798/
https://www.ncbi.nlm.nih.gov/pubmed/36311403
http://dx.doi.org/10.1002/ece3.9444
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author Gonnerman, Matthew
Linden, Daniel W.
Shea, Stephanie A.
Sullivan, Kelsey
Kamath, Pauline
Blomberg, Erik
author_facet Gonnerman, Matthew
Linden, Daniel W.
Shea, Stephanie A.
Sullivan, Kelsey
Kamath, Pauline
Blomberg, Erik
author_sort Gonnerman, Matthew
collection PubMed
description Abundance estimation is a critical component of conservation planning, particularly for exploited species where managers set regulations to restrict harvest based on current population size. An increasingly common approach for abundance estimation is through integrated population modeling (IPM), which uses multiple data sources in a joint likelihood to estimate abundance and additional demographic parameters. Lincoln estimators are one commonly used IPM component for harvested species, which combine information on the rate and total number of individuals harvested within an integrated band‐recovery framework to estimate abundance at large scales. A major assumption of the Lincoln estimator is that banding and recoveries are representative of the whole population, which may be violated if major sources of spatial heterogeneity in survival or harvest rates are not incorporated into the model. We developed an approach to account for spatial variation in harvest rates using a spatial predictive process, which we incorporated into a Lincoln estimator IPM. We simulated data under different configurations of sample sizes, harvest rates, and sources of spatial heterogeneity in harvest rate to assess potential model bias in parameter estimates. We then applied the model to data collected from a field study of wild turkeys (Meleagris gallapavo) to estimate local and statewide abundance in Maine, USA. We found that the band recovery model that incorporated a spatial predictive process consistently provided estimates of adult and juvenile abundance with low bias across a variety of spatial configurations of harvest rate and sampling intensities. When applied to data collected on wild turkeys, a model that did not incorporate spatial heterogeneity underestimated the harvest rate in some subregions. Consistent with simulation results, this led to overestimation of both local and statewide abundance. Our work demonstrates that a spatial predictive process is a viable mechanism to account for spatial variation in harvest rates and limit bias in abundance estimates. This approach could be extended to large‐scale band recovery data sets and has applicability for the estimation of population parameters in other ecological models as well.
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spelling pubmed-96087982022-10-28 Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance Gonnerman, Matthew Linden, Daniel W. Shea, Stephanie A. Sullivan, Kelsey Kamath, Pauline Blomberg, Erik Ecol Evol Research Articles Abundance estimation is a critical component of conservation planning, particularly for exploited species where managers set regulations to restrict harvest based on current population size. An increasingly common approach for abundance estimation is through integrated population modeling (IPM), which uses multiple data sources in a joint likelihood to estimate abundance and additional demographic parameters. Lincoln estimators are one commonly used IPM component for harvested species, which combine information on the rate and total number of individuals harvested within an integrated band‐recovery framework to estimate abundance at large scales. A major assumption of the Lincoln estimator is that banding and recoveries are representative of the whole population, which may be violated if major sources of spatial heterogeneity in survival or harvest rates are not incorporated into the model. We developed an approach to account for spatial variation in harvest rates using a spatial predictive process, which we incorporated into a Lincoln estimator IPM. We simulated data under different configurations of sample sizes, harvest rates, and sources of spatial heterogeneity in harvest rate to assess potential model bias in parameter estimates. We then applied the model to data collected from a field study of wild turkeys (Meleagris gallapavo) to estimate local and statewide abundance in Maine, USA. We found that the band recovery model that incorporated a spatial predictive process consistently provided estimates of adult and juvenile abundance with low bias across a variety of spatial configurations of harvest rate and sampling intensities. When applied to data collected on wild turkeys, a model that did not incorporate spatial heterogeneity underestimated the harvest rate in some subregions. Consistent with simulation results, this led to overestimation of both local and statewide abundance. Our work demonstrates that a spatial predictive process is a viable mechanism to account for spatial variation in harvest rates and limit bias in abundance estimates. This approach could be extended to large‐scale band recovery data sets and has applicability for the estimation of population parameters in other ecological models as well. John Wiley and Sons Inc. 2022-10-27 /pmc/articles/PMC9608798/ /pubmed/36311403 http://dx.doi.org/10.1002/ece3.9444 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Gonnerman, Matthew
Linden, Daniel W.
Shea, Stephanie A.
Sullivan, Kelsey
Kamath, Pauline
Blomberg, Erik
Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance
title Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance
title_full Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance
title_fullStr Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance
title_full_unstemmed Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance
title_short Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance
title_sort including a spatial predictive process in band recovery models improves inference for lincoln estimates of animal abundance
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9608798/
https://www.ncbi.nlm.nih.gov/pubmed/36311403
http://dx.doi.org/10.1002/ece3.9444
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