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A physics-informed neural network to model COVID-19 infection and hospitalization scenarios

In this paper, we replace the standard numerical approach of estimating parameters in a mathematical model using numerical solvers for differential equations with a physics-informed neural network (PINN). This neural network requires a sequence of time instances as direct input of the network and th...

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Autores principales: Berkhahn, Sarah, Ehrhardt, Matthias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9612630/
https://www.ncbi.nlm.nih.gov/pubmed/36320680
http://dx.doi.org/10.1186/s13662-022-03733-5
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author Berkhahn, Sarah
Ehrhardt, Matthias
author_facet Berkhahn, Sarah
Ehrhardt, Matthias
author_sort Berkhahn, Sarah
collection PubMed
description In this paper, we replace the standard numerical approach of estimating parameters in a mathematical model using numerical solvers for differential equations with a physics-informed neural network (PINN). This neural network requires a sequence of time instances as direct input of the network and the numbers of susceptibles, vaccinated, infected, hospitalized, and recovered individuals per time instance to learn certain parameters of the underlying model, which are used for the loss calculations. The established model is an extended susceptible-infected-recovered (SIR) model in which the transitions between disease-related population groups, called compartments, and the physical laws of epidemic transmission dynamics are expressed by a system of ordinary differential equations (ODEs). The system of ODEs and its time derivative are included in the residual loss function of the PINN in addition to the data error between the current network output and the time series data of the compartment sizes. Further, we illustrate how this PINN approach can also be used for differential equation-based models such as the proposed extended SIR model, called SVIHR model. In a validation process, we compare the performance of the PINN with results obtained with the numerical technique of non-standard finite differences (NSFD) in generating future COVID-19 scenarios based on the parameters identified by the PINN. The used training data set covers the time between the outbreak of the pandemic in Germany and the last week of the year 2021. We obtain a two-step or hybrid approach, as the PINN is then used to generate a future COVID-19 outbreak scenario describing a possibly next pandemic wave. The week at which the prediction starts is chosen in mid-April 2022.
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spelling pubmed-96126302022-10-28 A physics-informed neural network to model COVID-19 infection and hospitalization scenarios Berkhahn, Sarah Ehrhardt, Matthias Adv Contin Discret Model Research In this paper, we replace the standard numerical approach of estimating parameters in a mathematical model using numerical solvers for differential equations with a physics-informed neural network (PINN). This neural network requires a sequence of time instances as direct input of the network and the numbers of susceptibles, vaccinated, infected, hospitalized, and recovered individuals per time instance to learn certain parameters of the underlying model, which are used for the loss calculations. The established model is an extended susceptible-infected-recovered (SIR) model in which the transitions between disease-related population groups, called compartments, and the physical laws of epidemic transmission dynamics are expressed by a system of ordinary differential equations (ODEs). The system of ODEs and its time derivative are included in the residual loss function of the PINN in addition to the data error between the current network output and the time series data of the compartment sizes. Further, we illustrate how this PINN approach can also be used for differential equation-based models such as the proposed extended SIR model, called SVIHR model. In a validation process, we compare the performance of the PINN with results obtained with the numerical technique of non-standard finite differences (NSFD) in generating future COVID-19 scenarios based on the parameters identified by the PINN. The used training data set covers the time between the outbreak of the pandemic in Germany and the last week of the year 2021. We obtain a two-step or hybrid approach, as the PINN is then used to generate a future COVID-19 outbreak scenario describing a possibly next pandemic wave. The week at which the prediction starts is chosen in mid-April 2022. Springer International Publishing 2022-10-27 2022 /pmc/articles/PMC9612630/ /pubmed/36320680 http://dx.doi.org/10.1186/s13662-022-03733-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research
Berkhahn, Sarah
Ehrhardt, Matthias
A physics-informed neural network to model COVID-19 infection and hospitalization scenarios
title A physics-informed neural network to model COVID-19 infection and hospitalization scenarios
title_full A physics-informed neural network to model COVID-19 infection and hospitalization scenarios
title_fullStr A physics-informed neural network to model COVID-19 infection and hospitalization scenarios
title_full_unstemmed A physics-informed neural network to model COVID-19 infection and hospitalization scenarios
title_short A physics-informed neural network to model COVID-19 infection and hospitalization scenarios
title_sort physics-informed neural network to model covid-19 infection and hospitalization scenarios
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9612630/
https://www.ncbi.nlm.nih.gov/pubmed/36320680
http://dx.doi.org/10.1186/s13662-022-03733-5
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