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NEUROD1 predicts better prognosis in pancreatic cancer revealed by a TILs-based prognostic signature
It has been well-defined that tumor-infiltrating lymphocytes (TILs) play critical roles in pancreatic cancer (PaCa) progression. This research aimed to comprehensively explore the composition of TILs in PaCa and their potential clinical significance. A total of 178 samples from the TCGA and 63 sampl...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9612957/ https://www.ncbi.nlm.nih.gov/pubmed/36313290 http://dx.doi.org/10.3389/fphar.2022.1025921 |
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author | Jiang, Zhiyang Pan, Jiadong Lu, Jiahui Mei, Jie Xu, Rui Xia, Dandan Yang, Xuejing Wang, Huiyu Liu, Chaoying Xu, Junying Ding, Junli |
author_facet | Jiang, Zhiyang Pan, Jiadong Lu, Jiahui Mei, Jie Xu, Rui Xia, Dandan Yang, Xuejing Wang, Huiyu Liu, Chaoying Xu, Junying Ding, Junli |
author_sort | Jiang, Zhiyang |
collection | PubMed |
description | It has been well-defined that tumor-infiltrating lymphocytes (TILs) play critical roles in pancreatic cancer (PaCa) progression. This research aimed to comprehensively explore the composition of TILs in PaCa and their potential clinical significance. A total of 178 samples from the TCGA and 63 samples from the GSE57495 dataset were enrolled in our study. ImmuCellAI was applied to calculate the infiltrating abundance of 24 immune cell types in PaCa and further survival analysis revealed the prognostic values of TILs in PaCa. Moreover, the Hallmark enticement analysis of differentially expressed genes (DEGs) between low- and high-risk groups was performed as well. Immunohistochemistry staining was used to evaluate NEUROD1 expression. As result, different kinds of TILs had distinct infiltrating features. In addition, Specific TILs subsets had notable prognostic values in PaCa. We further established a 6-TILs signature to assess the prognosis of PaCa patients. Kaplan-Meier and Cox regression analyses both suggested the significant prognostic value of the signature in PaCa. Based on the prognostic signature, we screened a great deal of potential prognostic biomarkers and successfully validated NEUROD1 as a novel prognostic biomarker in PaCa. Overall, the current study illuminated the immune cells infiltrating the landscape in PaCa and identified a TILs-dependent signature and NEUROD1 for prognostic prediction in PaCa patients. |
format | Online Article Text |
id | pubmed-9612957 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96129572022-10-28 NEUROD1 predicts better prognosis in pancreatic cancer revealed by a TILs-based prognostic signature Jiang, Zhiyang Pan, Jiadong Lu, Jiahui Mei, Jie Xu, Rui Xia, Dandan Yang, Xuejing Wang, Huiyu Liu, Chaoying Xu, Junying Ding, Junli Front Pharmacol Pharmacology It has been well-defined that tumor-infiltrating lymphocytes (TILs) play critical roles in pancreatic cancer (PaCa) progression. This research aimed to comprehensively explore the composition of TILs in PaCa and their potential clinical significance. A total of 178 samples from the TCGA and 63 samples from the GSE57495 dataset were enrolled in our study. ImmuCellAI was applied to calculate the infiltrating abundance of 24 immune cell types in PaCa and further survival analysis revealed the prognostic values of TILs in PaCa. Moreover, the Hallmark enticement analysis of differentially expressed genes (DEGs) between low- and high-risk groups was performed as well. Immunohistochemistry staining was used to evaluate NEUROD1 expression. As result, different kinds of TILs had distinct infiltrating features. In addition, Specific TILs subsets had notable prognostic values in PaCa. We further established a 6-TILs signature to assess the prognosis of PaCa patients. Kaplan-Meier and Cox regression analyses both suggested the significant prognostic value of the signature in PaCa. Based on the prognostic signature, we screened a great deal of potential prognostic biomarkers and successfully validated NEUROD1 as a novel prognostic biomarker in PaCa. Overall, the current study illuminated the immune cells infiltrating the landscape in PaCa and identified a TILs-dependent signature and NEUROD1 for prognostic prediction in PaCa patients. Frontiers Media S.A. 2022-10-13 /pmc/articles/PMC9612957/ /pubmed/36313290 http://dx.doi.org/10.3389/fphar.2022.1025921 Text en Copyright © 2022 Jiang, Pan, Lu, Mei, Xu, Xia, Yang, Wang, Liu, Xu and Ding. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Jiang, Zhiyang Pan, Jiadong Lu, Jiahui Mei, Jie Xu, Rui Xia, Dandan Yang, Xuejing Wang, Huiyu Liu, Chaoying Xu, Junying Ding, Junli NEUROD1 predicts better prognosis in pancreatic cancer revealed by a TILs-based prognostic signature |
title | NEUROD1 predicts better prognosis in pancreatic cancer revealed by a TILs-based prognostic signature |
title_full | NEUROD1 predicts better prognosis in pancreatic cancer revealed by a TILs-based prognostic signature |
title_fullStr | NEUROD1 predicts better prognosis in pancreatic cancer revealed by a TILs-based prognostic signature |
title_full_unstemmed | NEUROD1 predicts better prognosis in pancreatic cancer revealed by a TILs-based prognostic signature |
title_short | NEUROD1 predicts better prognosis in pancreatic cancer revealed by a TILs-based prognostic signature |
title_sort | neurod1 predicts better prognosis in pancreatic cancer revealed by a tils-based prognostic signature |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9612957/ https://www.ncbi.nlm.nih.gov/pubmed/36313290 http://dx.doi.org/10.3389/fphar.2022.1025921 |
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