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Identifying accurate link predictors based on assortativity of complex networks
Link prediction algorithms in complex networks, such as social networks, biological networks, drug-drug interactions, communication networks, and so on, assign scores to predict potential links between two nodes. Link prediction (LP) enables researchers to learn unknown, new as well as future intera...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9613685/ https://www.ncbi.nlm.nih.gov/pubmed/36302826 http://dx.doi.org/10.1038/s41598-022-22843-4 |
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author | Al Musawi, Ahmad F. Roy, Satyaki Ghosh, Preetam |
author_facet | Al Musawi, Ahmad F. Roy, Satyaki Ghosh, Preetam |
author_sort | Al Musawi, Ahmad F. |
collection | PubMed |
description | Link prediction algorithms in complex networks, such as social networks, biological networks, drug-drug interactions, communication networks, and so on, assign scores to predict potential links between two nodes. Link prediction (LP) enables researchers to learn unknown, new as well as future interactions among the entities being modeled in the complex networks. In addition to measures like degree distribution, clustering coefficient, centrality, etc., another metric to characterize structural properties is network assortativity which measures the tendency of nodes to connect with similar nodes. In this paper, we explore metrics that effectively predict the links based on the assortativity profiles of the complex networks. To this end, we first propose an approach that generates networks of varying assortativity levels and utilize three sets of link prediction models combining the similarity of neighborhoods and preferential attachment. We carry out experiments to study the LP accuracy (measured in terms of area under the precision-recall curve) of the link predictors individually and in combination with other baseline measures. Our analysis shows that link prediction models that explore a large neighborhood around nodes of interest, such as CH2-L2 and CH2-L3, perform consistently for assortative as well as disassortative networks. While common neighbor-based local measures are effective for assortative networks, our proposed combination of common neighbors with node degree is a good choice for the LP metric in disassortative networks. We discuss how this analysis helps achieve the best-parameterized combination of link prediction models and its significance in the context of link prediction from incomplete social and biological network data. |
format | Online Article Text |
id | pubmed-9613685 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-96136852022-10-29 Identifying accurate link predictors based on assortativity of complex networks Al Musawi, Ahmad F. Roy, Satyaki Ghosh, Preetam Sci Rep Article Link prediction algorithms in complex networks, such as social networks, biological networks, drug-drug interactions, communication networks, and so on, assign scores to predict potential links between two nodes. Link prediction (LP) enables researchers to learn unknown, new as well as future interactions among the entities being modeled in the complex networks. In addition to measures like degree distribution, clustering coefficient, centrality, etc., another metric to characterize structural properties is network assortativity which measures the tendency of nodes to connect with similar nodes. In this paper, we explore metrics that effectively predict the links based on the assortativity profiles of the complex networks. To this end, we first propose an approach that generates networks of varying assortativity levels and utilize three sets of link prediction models combining the similarity of neighborhoods and preferential attachment. We carry out experiments to study the LP accuracy (measured in terms of area under the precision-recall curve) of the link predictors individually and in combination with other baseline measures. Our analysis shows that link prediction models that explore a large neighborhood around nodes of interest, such as CH2-L2 and CH2-L3, perform consistently for assortative as well as disassortative networks. While common neighbor-based local measures are effective for assortative networks, our proposed combination of common neighbors with node degree is a good choice for the LP metric in disassortative networks. We discuss how this analysis helps achieve the best-parameterized combination of link prediction models and its significance in the context of link prediction from incomplete social and biological network data. Nature Publishing Group UK 2022-10-27 /pmc/articles/PMC9613685/ /pubmed/36302826 http://dx.doi.org/10.1038/s41598-022-22843-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Al Musawi, Ahmad F. Roy, Satyaki Ghosh, Preetam Identifying accurate link predictors based on assortativity of complex networks |
title | Identifying accurate link predictors based on assortativity of complex networks |
title_full | Identifying accurate link predictors based on assortativity of complex networks |
title_fullStr | Identifying accurate link predictors based on assortativity of complex networks |
title_full_unstemmed | Identifying accurate link predictors based on assortativity of complex networks |
title_short | Identifying accurate link predictors based on assortativity of complex networks |
title_sort | identifying accurate link predictors based on assortativity of complex networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9613685/ https://www.ncbi.nlm.nih.gov/pubmed/36302826 http://dx.doi.org/10.1038/s41598-022-22843-4 |
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