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Morphologic identification of clinically encountered moulds using a residual neural network
The use of morphology to diagnose invasive mould infections in China still faces substantial challenges, which often leads to delayed diagnosis or misdiagnosis. We developed a model called XMVision Fungus AI to identify mould infections by training, testing, and evaluating a ResNet-50 model. Our res...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9614265/ https://www.ncbi.nlm.nih.gov/pubmed/36312928 http://dx.doi.org/10.3389/fmicb.2022.1021236 |
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author | Jing, Ran Yin, Xiang-Long Xie, Xiu-Li Lian, He-Qing Li, Jin Zhang, Ge Yang, Wen-Hang Sun, Tian-Shu Xu, Ying-Chun |
author_facet | Jing, Ran Yin, Xiang-Long Xie, Xiu-Li Lian, He-Qing Li, Jin Zhang, Ge Yang, Wen-Hang Sun, Tian-Shu Xu, Ying-Chun |
author_sort | Jing, Ran |
collection | PubMed |
description | The use of morphology to diagnose invasive mould infections in China still faces substantial challenges, which often leads to delayed diagnosis or misdiagnosis. We developed a model called XMVision Fungus AI to identify mould infections by training, testing, and evaluating a ResNet-50 model. Our research achieved the rapid identification of nine common clinical moulds: Aspergillus fumigatus complex, Aspergillus flavus complex, Aspergillus niger complex, Aspergillus terreus complex, Aspergillus nidulans, Aspergillus sydowii/Aspergillus versicolor, Syncephalastrum racemosum, Fusarium spp., and Penicillium spp. In our study, the adaptive image contrast enhancement enabling XMVision Fungus AI as a promising module by effectively improve the identification performance. The overall identification accuracy of XMVision Fungus AI was up to 93.00% (279/300), which was higher than that of human readers. XMVision Fungus AI shows intrinsic advantages in the identification of clinical moulds and can be applied to improve human identification efficiency through training. Moreover, it has great potential for clinical application because of its convenient operation and lower cost. This system will be suitable for primary hospitals in China and developing countries. |
format | Online Article Text |
id | pubmed-9614265 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96142652022-10-29 Morphologic identification of clinically encountered moulds using a residual neural network Jing, Ran Yin, Xiang-Long Xie, Xiu-Li Lian, He-Qing Li, Jin Zhang, Ge Yang, Wen-Hang Sun, Tian-Shu Xu, Ying-Chun Front Microbiol Microbiology The use of morphology to diagnose invasive mould infections in China still faces substantial challenges, which often leads to delayed diagnosis or misdiagnosis. We developed a model called XMVision Fungus AI to identify mould infections by training, testing, and evaluating a ResNet-50 model. Our research achieved the rapid identification of nine common clinical moulds: Aspergillus fumigatus complex, Aspergillus flavus complex, Aspergillus niger complex, Aspergillus terreus complex, Aspergillus nidulans, Aspergillus sydowii/Aspergillus versicolor, Syncephalastrum racemosum, Fusarium spp., and Penicillium spp. In our study, the adaptive image contrast enhancement enabling XMVision Fungus AI as a promising module by effectively improve the identification performance. The overall identification accuracy of XMVision Fungus AI was up to 93.00% (279/300), which was higher than that of human readers. XMVision Fungus AI shows intrinsic advantages in the identification of clinical moulds and can be applied to improve human identification efficiency through training. Moreover, it has great potential for clinical application because of its convenient operation and lower cost. This system will be suitable for primary hospitals in China and developing countries. Frontiers Media S.A. 2022-10-14 /pmc/articles/PMC9614265/ /pubmed/36312928 http://dx.doi.org/10.3389/fmicb.2022.1021236 Text en Copyright © 2022 Jing, Yin, Xie, Lian, Li, Zhang, Yang, Sun and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Jing, Ran Yin, Xiang-Long Xie, Xiu-Li Lian, He-Qing Li, Jin Zhang, Ge Yang, Wen-Hang Sun, Tian-Shu Xu, Ying-Chun Morphologic identification of clinically encountered moulds using a residual neural network |
title | Morphologic identification of clinically encountered moulds using a residual neural network |
title_full | Morphologic identification of clinically encountered moulds using a residual neural network |
title_fullStr | Morphologic identification of clinically encountered moulds using a residual neural network |
title_full_unstemmed | Morphologic identification of clinically encountered moulds using a residual neural network |
title_short | Morphologic identification of clinically encountered moulds using a residual neural network |
title_sort | morphologic identification of clinically encountered moulds using a residual neural network |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9614265/ https://www.ncbi.nlm.nih.gov/pubmed/36312928 http://dx.doi.org/10.3389/fmicb.2022.1021236 |
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