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Morphologic identification of clinically encountered moulds using a residual neural network

The use of morphology to diagnose invasive mould infections in China still faces substantial challenges, which often leads to delayed diagnosis or misdiagnosis. We developed a model called XMVision Fungus AI to identify mould infections by training, testing, and evaluating a ResNet-50 model. Our res...

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Autores principales: Jing, Ran, Yin, Xiang-Long, Xie, Xiu-Li, Lian, He-Qing, Li, Jin, Zhang, Ge, Yang, Wen-Hang, Sun, Tian-Shu, Xu, Ying-Chun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9614265/
https://www.ncbi.nlm.nih.gov/pubmed/36312928
http://dx.doi.org/10.3389/fmicb.2022.1021236
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author Jing, Ran
Yin, Xiang-Long
Xie, Xiu-Li
Lian, He-Qing
Li, Jin
Zhang, Ge
Yang, Wen-Hang
Sun, Tian-Shu
Xu, Ying-Chun
author_facet Jing, Ran
Yin, Xiang-Long
Xie, Xiu-Li
Lian, He-Qing
Li, Jin
Zhang, Ge
Yang, Wen-Hang
Sun, Tian-Shu
Xu, Ying-Chun
author_sort Jing, Ran
collection PubMed
description The use of morphology to diagnose invasive mould infections in China still faces substantial challenges, which often leads to delayed diagnosis or misdiagnosis. We developed a model called XMVision Fungus AI to identify mould infections by training, testing, and evaluating a ResNet-50 model. Our research achieved the rapid identification of nine common clinical moulds: Aspergillus fumigatus complex, Aspergillus flavus complex, Aspergillus niger complex, Aspergillus terreus complex, Aspergillus nidulans, Aspergillus sydowii/Aspergillus versicolor, Syncephalastrum racemosum, Fusarium spp., and Penicillium spp. In our study, the adaptive image contrast enhancement enabling XMVision Fungus AI as a promising module by effectively improve the identification performance. The overall identification accuracy of XMVision Fungus AI was up to 93.00% (279/300), which was higher than that of human readers. XMVision Fungus AI shows intrinsic advantages in the identification of clinical moulds and can be applied to improve human identification efficiency through training. Moreover, it has great potential for clinical application because of its convenient operation and lower cost. This system will be suitable for primary hospitals in China and developing countries.
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spelling pubmed-96142652022-10-29 Morphologic identification of clinically encountered moulds using a residual neural network Jing, Ran Yin, Xiang-Long Xie, Xiu-Li Lian, He-Qing Li, Jin Zhang, Ge Yang, Wen-Hang Sun, Tian-Shu Xu, Ying-Chun Front Microbiol Microbiology The use of morphology to diagnose invasive mould infections in China still faces substantial challenges, which often leads to delayed diagnosis or misdiagnosis. We developed a model called XMVision Fungus AI to identify mould infections by training, testing, and evaluating a ResNet-50 model. Our research achieved the rapid identification of nine common clinical moulds: Aspergillus fumigatus complex, Aspergillus flavus complex, Aspergillus niger complex, Aspergillus terreus complex, Aspergillus nidulans, Aspergillus sydowii/Aspergillus versicolor, Syncephalastrum racemosum, Fusarium spp., and Penicillium spp. In our study, the adaptive image contrast enhancement enabling XMVision Fungus AI as a promising module by effectively improve the identification performance. The overall identification accuracy of XMVision Fungus AI was up to 93.00% (279/300), which was higher than that of human readers. XMVision Fungus AI shows intrinsic advantages in the identification of clinical moulds and can be applied to improve human identification efficiency through training. Moreover, it has great potential for clinical application because of its convenient operation and lower cost. This system will be suitable for primary hospitals in China and developing countries. Frontiers Media S.A. 2022-10-14 /pmc/articles/PMC9614265/ /pubmed/36312928 http://dx.doi.org/10.3389/fmicb.2022.1021236 Text en Copyright © 2022 Jing, Yin, Xie, Lian, Li, Zhang, Yang, Sun and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Jing, Ran
Yin, Xiang-Long
Xie, Xiu-Li
Lian, He-Qing
Li, Jin
Zhang, Ge
Yang, Wen-Hang
Sun, Tian-Shu
Xu, Ying-Chun
Morphologic identification of clinically encountered moulds using a residual neural network
title Morphologic identification of clinically encountered moulds using a residual neural network
title_full Morphologic identification of clinically encountered moulds using a residual neural network
title_fullStr Morphologic identification of clinically encountered moulds using a residual neural network
title_full_unstemmed Morphologic identification of clinically encountered moulds using a residual neural network
title_short Morphologic identification of clinically encountered moulds using a residual neural network
title_sort morphologic identification of clinically encountered moulds using a residual neural network
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9614265/
https://www.ncbi.nlm.nih.gov/pubmed/36312928
http://dx.doi.org/10.3389/fmicb.2022.1021236
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