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When is a hydrophobic gate not a hydrophobic gate?

The flux of ions through a channel is most commonly regulated by changes that result in steric occlusion of its pore. However, ion permeation can also be prevented by formation of a desolvation barrier created by hydrophobic residues that line the pore. As a result of relatively minor structural cha...

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Detalles Bibliográficos
Autores principales: Seiferth, David, Biggin, Philip C., Tucker, Stephen J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Rockefeller University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9614698/
https://www.ncbi.nlm.nih.gov/pubmed/36287215
http://dx.doi.org/10.1085/jgp.202213210
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author Seiferth, David
Biggin, Philip C.
Tucker, Stephen J.
author_facet Seiferth, David
Biggin, Philip C.
Tucker, Stephen J.
author_sort Seiferth, David
collection PubMed
description The flux of ions through a channel is most commonly regulated by changes that result in steric occlusion of its pore. However, ion permeation can also be prevented by formation of a desolvation barrier created by hydrophobic residues that line the pore. As a result of relatively minor structural changes, confined hydrophobic regions in channels may undergo transitions between wet and dry states to gate the pore closed without physical constriction of the permeation pathway. This concept is referred to as hydrophobic gating, and many examples of this process have been demonstrated. However, the term is also now being used in a much broader context that often deviates from its original meaning. In this Viewpoint, we explore the formal definition of a hydrophobic gate, discuss examples of this process compared with other gating mechanisms that simply exploit hydrophobic residues and/or lipids in steric closure of the pore, and describe the best practice for identification of a hydrophobic gate.
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spelling pubmed-96146982023-04-26 When is a hydrophobic gate not a hydrophobic gate? Seiferth, David Biggin, Philip C. Tucker, Stephen J. J Gen Physiol Viewpoint The flux of ions through a channel is most commonly regulated by changes that result in steric occlusion of its pore. However, ion permeation can also be prevented by formation of a desolvation barrier created by hydrophobic residues that line the pore. As a result of relatively minor structural changes, confined hydrophobic regions in channels may undergo transitions between wet and dry states to gate the pore closed without physical constriction of the permeation pathway. This concept is referred to as hydrophobic gating, and many examples of this process have been demonstrated. However, the term is also now being used in a much broader context that often deviates from its original meaning. In this Viewpoint, we explore the formal definition of a hydrophobic gate, discuss examples of this process compared with other gating mechanisms that simply exploit hydrophobic residues and/or lipids in steric closure of the pore, and describe the best practice for identification of a hydrophobic gate. Rockefeller University Press 2022-10-26 /pmc/articles/PMC9614698/ /pubmed/36287215 http://dx.doi.org/10.1085/jgp.202213210 Text en © 2022 Seiferth et al. https://creativecommons.org/licenses/by-nc-sa/4.0/http://www.rupress.org/terms/This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).
spellingShingle Viewpoint
Seiferth, David
Biggin, Philip C.
Tucker, Stephen J.
When is a hydrophobic gate not a hydrophobic gate?
title When is a hydrophobic gate not a hydrophobic gate?
title_full When is a hydrophobic gate not a hydrophobic gate?
title_fullStr When is a hydrophobic gate not a hydrophobic gate?
title_full_unstemmed When is a hydrophobic gate not a hydrophobic gate?
title_short When is a hydrophobic gate not a hydrophobic gate?
title_sort when is a hydrophobic gate not a hydrophobic gate?
topic Viewpoint
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9614698/
https://www.ncbi.nlm.nih.gov/pubmed/36287215
http://dx.doi.org/10.1085/jgp.202213210
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