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Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021
BACKGROUND: Tracking person-to-person SARS-CoV-2 transmission in the population is important to understand the epidemiology of community transmission and may contribute to the containment of SARS-CoV-2. Neither contact tracing nor genomic surveillance alone, however, are typically sufficient to achi...
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
European Centre for Disease Prevention and Control (ECDC)
2022
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9615415/ https://www.ncbi.nlm.nih.gov/pubmed/36305336 http://dx.doi.org/10.2807/1560-7917.ES.2022.27.43.2101089 |
| _version_ | 1784820416289701888 |
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| author | Houwaart, Torsten Belhaj, Samir Tawalbeh, Emran Nagels, Dirk Fröhlich, Yara Finzer, Patrick Ciruela, Pilar Sabrià, Aurora Herrero, Mercè Andrés, Cristina Antón, Andrés Benmoumene, Assia Asskali, Dounia Haidar, Hussein von Dahlen, Janina Nicolai, Jessica Stiller, Mygg Blum, Jacqueline Lange, Christian Adelmann, Carla Schroer, Britta Osmers, Ute Grice, Christiane Kirfel, Phillipp P. Jomaa, Hassan Strelow, Daniel Hülse, Lisanna Pigulla, Moritz Kreuzer, Pascal Tyshaieva, Alona Weber, Jonas Wienemann, Tobias Kohns Vasconcelos, Malte Hoffmann, Katrin Lübke, Nadine Hauka, Sandra Andree, Marcel Scholz, Claus Jürgen Jazmati, Nathalie Göbels, Klaus Zotz, Rainer Pfeffer, Klaus Timm, Jörg Ehlkes, Lutz Walker, Andreas Dilthey, Alexander T. Altmüller, Janine Angelov, Angel Aschenbrenner, Anna C. Bals, Robert Bartholomäus, Alexander Becker, Anke Becker, Matthias Bezdan, Daniela Bitzer, Michael Blumert, Conny Bonifacio, Ezio Bork, Peer Boyke, Bunk Blum, Helmut Casadei, Nicolas Clavel, Thomas Colome-Tatche, Maria Cornberg, Markus De La Rosa Velázquez, Inti Alberto Diefenbach, Andreas Dilthey, Alexander Fischer, Nicole Förstner, Konrad Franzenburg, Sören Frick, Julia-Stefanie Gabernet, Gisela Gagneur, Julien Ganzenmueller, Tina Gauder, Marie Geißert, Janina Goesmann, Alexander Göpel, Siri Grundhoff, Adam Grundmann, Hajo Hain, Torsten Hanses, Frank Hehr, Ute Heimbach, André Hoeper, Marius Horn, Friedemann Hübschmann, Daniel Hummel, Michael Iftner, Thomas Iftner, Angelika Illig, Thomas Janssen, Stefan Kalinowski, Jörn Kallies, René Kehr, Birte Keller, Andreas Keppler, Oliver T. Kim-Hellmuth, Sarah Klein, Christoph Knop, Michael Kohlbacher, Oliver Köhrer, Karl Korbel, Jan Kremsner, Peter G. Kühnert, Denise Kurth, Ingo Landthaler, Markus Li, Yang Ludwig, Kerstin U. Makarewicz, Oliwia Marz, Manja McHardy, Alice C. Mertes, Christian Münchhoff, Maximilian Nahnsen, Sven Nöthen, Markus Ntoumi, Francine Nürnberg, Peter Ossowski, Stephan Overmann, Jörg Peter, Silke Pfeffer, Klaus Pink, Isabell Poetsch, Anna R. Protzer, Ulrike Pühler, Alfred Rajewsky, Nikolaus Ralser, Markus Reiche, Kristin Rieß, Olaf Ripke, Stephan Nunes da Rocha, Ulisses Rosenstiel, Philip Saliba, Antoine-Emmanuel Sander, Leif Erik Sawitzki, Birgit Scheithauer, Simone Schiffer, Philipp Schmid-Burgk, Jonathan Schneider, Wulf Schulte, Eva-Christina Schultze, Joachim L. Sczyrba, Alexander Sharaf, Mariam L. Singh, Yogesh Sonnabend, Michael Stegle, Oliver Stoye, Jens Theis, Fabian Ulas, Thomas Vehreschild, Janne Velavan, Thirumalaisamy P. Vogel, Jörg Volland, Sonja von Kleist, Max Walker, Andreas Walter, Jörn Wieczorek, Dagmar Winkler, Sylke Ziebuhr, John |
| author_facet | Houwaart, Torsten Belhaj, Samir Tawalbeh, Emran Nagels, Dirk Fröhlich, Yara Finzer, Patrick Ciruela, Pilar Sabrià, Aurora Herrero, Mercè Andrés, Cristina Antón, Andrés Benmoumene, Assia Asskali, Dounia Haidar, Hussein von Dahlen, Janina Nicolai, Jessica Stiller, Mygg Blum, Jacqueline Lange, Christian Adelmann, Carla Schroer, Britta Osmers, Ute Grice, Christiane Kirfel, Phillipp P. Jomaa, Hassan Strelow, Daniel Hülse, Lisanna Pigulla, Moritz Kreuzer, Pascal Tyshaieva, Alona Weber, Jonas Wienemann, Tobias Kohns Vasconcelos, Malte Hoffmann, Katrin Lübke, Nadine Hauka, Sandra Andree, Marcel Scholz, Claus Jürgen Jazmati, Nathalie Göbels, Klaus Zotz, Rainer Pfeffer, Klaus Timm, Jörg Ehlkes, Lutz Walker, Andreas Dilthey, Alexander T. Altmüller, Janine Angelov, Angel Aschenbrenner, Anna C. Bals, Robert Bartholomäus, Alexander Becker, Anke Becker, Matthias Bezdan, Daniela Bitzer, Michael Blumert, Conny Bonifacio, Ezio Bork, Peer Boyke, Bunk Blum, Helmut Casadei, Nicolas Clavel, Thomas Colome-Tatche, Maria Cornberg, Markus De La Rosa Velázquez, Inti Alberto Diefenbach, Andreas Dilthey, Alexander Fischer, Nicole Förstner, Konrad Franzenburg, Sören Frick, Julia-Stefanie Gabernet, Gisela Gagneur, Julien Ganzenmueller, Tina Gauder, Marie Geißert, Janina Goesmann, Alexander Göpel, Siri Grundhoff, Adam Grundmann, Hajo Hain, Torsten Hanses, Frank Hehr, Ute Heimbach, André Hoeper, Marius Horn, Friedemann Hübschmann, Daniel Hummel, Michael Iftner, Thomas Iftner, Angelika Illig, Thomas Janssen, Stefan Kalinowski, Jörn Kallies, René Kehr, Birte Keller, Andreas Keppler, Oliver T. Kim-Hellmuth, Sarah Klein, Christoph Knop, Michael Kohlbacher, Oliver Köhrer, Karl Korbel, Jan Kremsner, Peter G. Kühnert, Denise Kurth, Ingo Landthaler, Markus Li, Yang Ludwig, Kerstin U. Makarewicz, Oliwia Marz, Manja McHardy, Alice C. Mertes, Christian Münchhoff, Maximilian Nahnsen, Sven Nöthen, Markus Ntoumi, Francine Nürnberg, Peter Ossowski, Stephan Overmann, Jörg Peter, Silke Pfeffer, Klaus Pink, Isabell Poetsch, Anna R. Protzer, Ulrike Pühler, Alfred Rajewsky, Nikolaus Ralser, Markus Reiche, Kristin Rieß, Olaf Ripke, Stephan Nunes da Rocha, Ulisses Rosenstiel, Philip Saliba, Antoine-Emmanuel Sander, Leif Erik Sawitzki, Birgit Scheithauer, Simone Schiffer, Philipp Schmid-Burgk, Jonathan Schneider, Wulf Schulte, Eva-Christina Schultze, Joachim L. Sczyrba, Alexander Sharaf, Mariam L. Singh, Yogesh Sonnabend, Michael Stegle, Oliver Stoye, Jens Theis, Fabian Ulas, Thomas Vehreschild, Janne Velavan, Thirumalaisamy P. Vogel, Jörg Volland, Sonja von Kleist, Max Walker, Andreas Walter, Jörn Wieczorek, Dagmar Winkler, Sylke Ziebuhr, John |
| author_sort | Houwaart, Torsten |
| collection | PubMed |
| description | BACKGROUND: Tracking person-to-person SARS-CoV-2 transmission in the population is important to understand the epidemiology of community transmission and may contribute to the containment of SARS-CoV-2. Neither contact tracing nor genomic surveillance alone, however, are typically sufficient to achieve this objective. AIM: We demonstrate the successful application of the integrated genomic surveillance (IGS) system of the German city of Düsseldorf for tracing SARS-CoV-2 transmission chains in the population as well as detecting and investigating travel-associated SARS-CoV-2 infection clusters. METHODS: Genomic surveillance, phylogenetic analysis, and structured case interviews were integrated to elucidate two genetically defined clusters of SARS-CoV-2 isolates detected by IGS in Düsseldorf in July 2021. RESULTS: Cluster 1 (n = 67 Düsseldorf cases) and Cluster 2 (n = 36) were detected in a surveillance dataset of 518 high-quality SARS-CoV-2 genomes from Düsseldorf (53% of total cases, sampled mid-June to July 2021). Cluster 1 could be traced back to a complex pattern of transmission in nightlife venues following a putative importation by a SARS-CoV-2-infected return traveller (IP) in late June; 28 SARS-CoV-2 cases could be epidemiologically directly linked to IP. Supported by viral genome data from Spain, Cluster 2 was shown to represent multiple independent introduction events of a viral strain circulating in Catalonia and other European countries, followed by diffuse community transmission in Düsseldorf. CONCLUSION: IGS enabled high-resolution tracing of SARS-CoV-2 transmission in an internationally connected city during community transmission and provided infection chain-level evidence of the downstream propagation of travel-imported SARS-CoV-2 cases. |
| format | Online Article Text |
| id | pubmed-9615415 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2022 |
| publisher | European Centre for Disease Prevention and Control (ECDC) |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-96154152022-11-03 Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021 Houwaart, Torsten Belhaj, Samir Tawalbeh, Emran Nagels, Dirk Fröhlich, Yara Finzer, Patrick Ciruela, Pilar Sabrià, Aurora Herrero, Mercè Andrés, Cristina Antón, Andrés Benmoumene, Assia Asskali, Dounia Haidar, Hussein von Dahlen, Janina Nicolai, Jessica Stiller, Mygg Blum, Jacqueline Lange, Christian Adelmann, Carla Schroer, Britta Osmers, Ute Grice, Christiane Kirfel, Phillipp P. Jomaa, Hassan Strelow, Daniel Hülse, Lisanna Pigulla, Moritz Kreuzer, Pascal Tyshaieva, Alona Weber, Jonas Wienemann, Tobias Kohns Vasconcelos, Malte Hoffmann, Katrin Lübke, Nadine Hauka, Sandra Andree, Marcel Scholz, Claus Jürgen Jazmati, Nathalie Göbels, Klaus Zotz, Rainer Pfeffer, Klaus Timm, Jörg Ehlkes, Lutz Walker, Andreas Dilthey, Alexander T. Altmüller, Janine Angelov, Angel Aschenbrenner, Anna C. Bals, Robert Bartholomäus, Alexander Becker, Anke Becker, Matthias Bezdan, Daniela Bitzer, Michael Blumert, Conny Bonifacio, Ezio Bork, Peer Boyke, Bunk Blum, Helmut Casadei, Nicolas Clavel, Thomas Colome-Tatche, Maria Cornberg, Markus De La Rosa Velázquez, Inti Alberto Diefenbach, Andreas Dilthey, Alexander Fischer, Nicole Förstner, Konrad Franzenburg, Sören Frick, Julia-Stefanie Gabernet, Gisela Gagneur, Julien Ganzenmueller, Tina Gauder, Marie Geißert, Janina Goesmann, Alexander Göpel, Siri Grundhoff, Adam Grundmann, Hajo Hain, Torsten Hanses, Frank Hehr, Ute Heimbach, André Hoeper, Marius Horn, Friedemann Hübschmann, Daniel Hummel, Michael Iftner, Thomas Iftner, Angelika Illig, Thomas Janssen, Stefan Kalinowski, Jörn Kallies, René Kehr, Birte Keller, Andreas Keppler, Oliver T. Kim-Hellmuth, Sarah Klein, Christoph Knop, Michael Kohlbacher, Oliver Köhrer, Karl Korbel, Jan Kremsner, Peter G. Kühnert, Denise Kurth, Ingo Landthaler, Markus Li, Yang Ludwig, Kerstin U. Makarewicz, Oliwia Marz, Manja McHardy, Alice C. Mertes, Christian Münchhoff, Maximilian Nahnsen, Sven Nöthen, Markus Ntoumi, Francine Nürnberg, Peter Ossowski, Stephan Overmann, Jörg Peter, Silke Pfeffer, Klaus Pink, Isabell Poetsch, Anna R. Protzer, Ulrike Pühler, Alfred Rajewsky, Nikolaus Ralser, Markus Reiche, Kristin Rieß, Olaf Ripke, Stephan Nunes da Rocha, Ulisses Rosenstiel, Philip Saliba, Antoine-Emmanuel Sander, Leif Erik Sawitzki, Birgit Scheithauer, Simone Schiffer, Philipp Schmid-Burgk, Jonathan Schneider, Wulf Schulte, Eva-Christina Schultze, Joachim L. Sczyrba, Alexander Sharaf, Mariam L. Singh, Yogesh Sonnabend, Michael Stegle, Oliver Stoye, Jens Theis, Fabian Ulas, Thomas Vehreschild, Janne Velavan, Thirumalaisamy P. Vogel, Jörg Volland, Sonja von Kleist, Max Walker, Andreas Walter, Jörn Wieczorek, Dagmar Winkler, Sylke Ziebuhr, John Euro Surveill Surveillance BACKGROUND: Tracking person-to-person SARS-CoV-2 transmission in the population is important to understand the epidemiology of community transmission and may contribute to the containment of SARS-CoV-2. Neither contact tracing nor genomic surveillance alone, however, are typically sufficient to achieve this objective. AIM: We demonstrate the successful application of the integrated genomic surveillance (IGS) system of the German city of Düsseldorf for tracing SARS-CoV-2 transmission chains in the population as well as detecting and investigating travel-associated SARS-CoV-2 infection clusters. METHODS: Genomic surveillance, phylogenetic analysis, and structured case interviews were integrated to elucidate two genetically defined clusters of SARS-CoV-2 isolates detected by IGS in Düsseldorf in July 2021. RESULTS: Cluster 1 (n = 67 Düsseldorf cases) and Cluster 2 (n = 36) were detected in a surveillance dataset of 518 high-quality SARS-CoV-2 genomes from Düsseldorf (53% of total cases, sampled mid-June to July 2021). Cluster 1 could be traced back to a complex pattern of transmission in nightlife venues following a putative importation by a SARS-CoV-2-infected return traveller (IP) in late June; 28 SARS-CoV-2 cases could be epidemiologically directly linked to IP. Supported by viral genome data from Spain, Cluster 2 was shown to represent multiple independent introduction events of a viral strain circulating in Catalonia and other European countries, followed by diffuse community transmission in Düsseldorf. CONCLUSION: IGS enabled high-resolution tracing of SARS-CoV-2 transmission in an internationally connected city during community transmission and provided infection chain-level evidence of the downstream propagation of travel-imported SARS-CoV-2 cases. European Centre for Disease Prevention and Control (ECDC) 2022-10-27 /pmc/articles/PMC9615415/ /pubmed/36305336 http://dx.doi.org/10.2807/1560-7917.ES.2022.27.43.2101089 Text en This article is copyright of the authors or their affiliated institutions, 2022. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence, and indicate if changes were made. |
| spellingShingle | Surveillance Houwaart, Torsten Belhaj, Samir Tawalbeh, Emran Nagels, Dirk Fröhlich, Yara Finzer, Patrick Ciruela, Pilar Sabrià, Aurora Herrero, Mercè Andrés, Cristina Antón, Andrés Benmoumene, Assia Asskali, Dounia Haidar, Hussein von Dahlen, Janina Nicolai, Jessica Stiller, Mygg Blum, Jacqueline Lange, Christian Adelmann, Carla Schroer, Britta Osmers, Ute Grice, Christiane Kirfel, Phillipp P. Jomaa, Hassan Strelow, Daniel Hülse, Lisanna Pigulla, Moritz Kreuzer, Pascal Tyshaieva, Alona Weber, Jonas Wienemann, Tobias Kohns Vasconcelos, Malte Hoffmann, Katrin Lübke, Nadine Hauka, Sandra Andree, Marcel Scholz, Claus Jürgen Jazmati, Nathalie Göbels, Klaus Zotz, Rainer Pfeffer, Klaus Timm, Jörg Ehlkes, Lutz Walker, Andreas Dilthey, Alexander T. Altmüller, Janine Angelov, Angel Aschenbrenner, Anna C. Bals, Robert Bartholomäus, Alexander Becker, Anke Becker, Matthias Bezdan, Daniela Bitzer, Michael Blumert, Conny Bonifacio, Ezio Bork, Peer Boyke, Bunk Blum, Helmut Casadei, Nicolas Clavel, Thomas Colome-Tatche, Maria Cornberg, Markus De La Rosa Velázquez, Inti Alberto Diefenbach, Andreas Dilthey, Alexander Fischer, Nicole Förstner, Konrad Franzenburg, Sören Frick, Julia-Stefanie Gabernet, Gisela Gagneur, Julien Ganzenmueller, Tina Gauder, Marie Geißert, Janina Goesmann, Alexander Göpel, Siri Grundhoff, Adam Grundmann, Hajo Hain, Torsten Hanses, Frank Hehr, Ute Heimbach, André Hoeper, Marius Horn, Friedemann Hübschmann, Daniel Hummel, Michael Iftner, Thomas Iftner, Angelika Illig, Thomas Janssen, Stefan Kalinowski, Jörn Kallies, René Kehr, Birte Keller, Andreas Keppler, Oliver T. Kim-Hellmuth, Sarah Klein, Christoph Knop, Michael Kohlbacher, Oliver Köhrer, Karl Korbel, Jan Kremsner, Peter G. Kühnert, Denise Kurth, Ingo Landthaler, Markus Li, Yang Ludwig, Kerstin U. Makarewicz, Oliwia Marz, Manja McHardy, Alice C. Mertes, Christian Münchhoff, Maximilian Nahnsen, Sven Nöthen, Markus Ntoumi, Francine Nürnberg, Peter Ossowski, Stephan Overmann, Jörg Peter, Silke Pfeffer, Klaus Pink, Isabell Poetsch, Anna R. Protzer, Ulrike Pühler, Alfred Rajewsky, Nikolaus Ralser, Markus Reiche, Kristin Rieß, Olaf Ripke, Stephan Nunes da Rocha, Ulisses Rosenstiel, Philip Saliba, Antoine-Emmanuel Sander, Leif Erik Sawitzki, Birgit Scheithauer, Simone Schiffer, Philipp Schmid-Burgk, Jonathan Schneider, Wulf Schulte, Eva-Christina Schultze, Joachim L. Sczyrba, Alexander Sharaf, Mariam L. Singh, Yogesh Sonnabend, Michael Stegle, Oliver Stoye, Jens Theis, Fabian Ulas, Thomas Vehreschild, Janne Velavan, Thirumalaisamy P. Vogel, Jörg Volland, Sonja von Kleist, Max Walker, Andreas Walter, Jörn Wieczorek, Dagmar Winkler, Sylke Ziebuhr, John Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021 |
| title | Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021 |
| title_full | Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021 |
| title_fullStr | Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021 |
| title_full_unstemmed | Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021 |
| title_short | Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021 |
| title_sort | integrated genomic surveillance enables tracing of person-to-person sars-cov-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, germany, june to july 2021 |
| topic | Surveillance |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9615415/ https://www.ncbi.nlm.nih.gov/pubmed/36305336 http://dx.doi.org/10.2807/1560-7917.ES.2022.27.43.2101089 |
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