Cargando…

De novo transcriptome assembly using Illumina sequencing and development of EST-SSR markers in a monoecious herb Sagittaria trifolia Linn

BACKGROUND: Sagittaria trifolia Linn. is a widespread macrophyte in Asia and southeast Europe and cultivated in parts of Asia. Although a few genomic studies have been conducted for S. trifolia var. sinensis, a crop breed, there is limited genomic information on the wild species of S. trifolia. Effe...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tang, Hanqing, Saina, Josphat K., Long, Zhi-Cheng, Chen, Jinming, Dai, Can
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2022
Materias:	Agricultural Science
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9617548/ https://www.ncbi.nlm.nih.gov/pubmed/36317118 http://dx.doi.org/10.7717/peerj.14268

Ejemplares similares

Transcriptome analysis of colored calla lily (Zantedeschia rehmannii Engl.) by Illumina sequencing: de novo assembly, annotation and EST-SSR marker development
por: Wei, Zunzheng, et al.
Publicado: (2016)

Identification of Differentially Expressed Genes Relevant to Corm Formation in Sagittaria trifolia
por: Cheng, Libao, et al.
Publicado: (2013)

Selection of Reliable Reference Genes for Gene Expression Normalization in Sagittaria trifolia
por: Tang, Jing, et al.
Publicado: (2023)

The effects of density on size-dependent gender plasticity in the monoecious species Sagittaria potamogetifolia (Alismataceae)
por: Wang, Xiaowen, et al.
Publicado: (2019)

Sexual selection on male but not female function in monoecious and dioecious populations of broadleaf arrowhead (Sagittaria latifolia)
por: Kwok, Allison, et al.
Publicado: (2022)

Male reproductive success is not strongly affected by phenological changes in mate availability in monoecious Sagittaria latifolia
por: Kwok, Allison, et al.
Publicado: (2023)

The Roles of Hormone Signals Involved in Rhizosphere Pressure Response Induce Corm Expansion in Sagittaria trifolia
por: Li, Enjiao, et al.
Publicado: (2023)

ANTIMICROBIAL POTENTIAL OF VITEX TRIFOLIA Linn
por: Geetha, V., et al.
Publicado: (2004)

Effects of Population Size on Synchronous Display of Female and Male Flowers and Reproductive Output in Two Monoecious Sagittaria Species
por: Wang, Xiufang, et al.
Publicado: (2012)

De Novo Assembly of Transcriptome and Development of Novel EST-SSR Markers in Rhododendron rex Lévl. through Illumina Sequencing
por: Zhang, Yue, et al.
Publicado: (2017)

Development and characterization of EST-SSR markers for Ottelia acuminata var. jingxiensis (Hydrocharitaceae)(1)
por: Li, Zhi-Zhong, et al.
Publicado: (2017)

Development of polymorphic EST-SSR markers and characterization of the autotetraploid genome of sainfoin (Onobrychis viciifolia)
por: Shen, Shuheng, et al.
Publicado: (2019)

Physiological and Biochemical Responses of Sagittaria trifolia L. to Phytotoxic Ethyl Acetate Fungal Extract from Curvularia lunata Strain CLST-01
por: Wang, Kai, et al.
Publicado: (2023)

De novo assembly of transcriptomes, mining, and development of novel EST-SSR markers in Curcuma alismatifolia (Zingiberaceae family) through Illumina sequencing
por: Taheri, Sima, et al.
Publicado: (2019)

A review on chemical and biological properties of Cayratia trifolia Linn. (Vitaceae)
por: Kumar, Dinesh, et al.
Publicado: (2011)

Phytochemical Analysis, Biochemical and Mineral Composition and GC-MS Profiling of Methanolic Extract of Chinese Arrowhead Sagittaria trifolia L. from Northeast China
por: Ahmed, Maqsood, et al.
Publicado: (2019)

Virulence characteristics of Blumeria graminis f. sp. tritici and its genetic diversity by EST-SSR analyses
por: Zhang, Yazhao, et al.
Publicado: (2022)

Hybrid purity identification using EST-SSR markers and heterosis analysis of quantitative traits of Russian wildrye
por: Gao, Zhiqi, et al.
Publicado: (2022)

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)
por: Li, Dejun, et al.
Publicado: (2012)

Author Correction: De novo assembly of transcriptomes, mining, and development of novel EST-SSR markers in Curcuma alismatifolia (Zingiberaceae family) through Illumina sequencing
por: Taheri, Sima, et al.
Publicado: (2019)

Application of EST-SSR markers developed from the transcriptome of Torreya grandis (Taxaceae), a threatened nut-yielding conifer tree
por: Zeng, Jun, et al.
Publicado: (2018)

Global Transcriptome Sequencing Using the Illumina Platform and the Development of EST-SSR Markers in Autotetraploid Alfalfa
por: Liu, Zhipeng, et al.
Publicado: (2013)

De Novo Transcriptome Assembly and EST-SSR Marker Development and Application in Chrysosplenium macrophyllum
por: Xiang, Niyan, et al.
Publicado: (2023)

De novo assembly of Iron-Heart Cunninghamia lanceolata transcriptome and EST-SSR marker development for genetic diversity analysis
por: Liu, Sen, et al.
Publicado: (2023)

De Novo Assembly of Transcriptome Sequencing in Caragana korshinskii Kom. and Characterization of EST-SSR Markers
por: Long, Yan, et al.
Publicado: (2015)

Assessment of Anticarcinogenic Potential of Vitex trifolia and Triticum aestivum Linn by In Vitro Rat Liver Microsomal Degranulation
por: Mathankumar, Marimuthu, et al.
Publicado: (2015)

Development and Transferability of EST-SSR Markers for Pinus koraiensis from Cold-Stressed Transcriptome through Illumina Sequencing
por: Li, Xiang, et al.
Publicado: (2020)

De Novo Assembly of Auricularia polytricha Transcriptome Using Illumina Sequencing for Gene Discovery and SSR Marker Identification
por: Zhou, Yan, et al.
Publicado: (2014)

EST and EST-SSR marker resources for Iris
por: Tang, Shunxue, et al.
Publicado: (2009)

De novo transcriptomic analysis and identification of EST-SSR markers in Stephanandra incisa
por: Zhang, Cuiping, et al.
Publicado: (2021)

De novo Assembly and Characterization of the Testis Transcriptome and Development of EST-SSR Markers in the Cockroach Periplaneta americana
por: Chen, Wan, et al.
Publicado: (2015)

Characterization of SSR genomic abundance and identification of SSR markers for population genetics in Chinese jujube (Ziziphus jujuba Mill.)
por: Fu, Peng-cheng, et al.
Publicado: (2016)

De Novo Assembly of Bitter Gourd Transcriptomes: Gene Expression and Sequence Variations in Gynoecious and Monoecious Lines
por: Shukla, Anjali, et al.
Publicado: (2015)

Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing
por: Zhou, Qiang, et al.
Publicado: (2016)

Characterization of the Kenaf (Hibiscus cannabinus) Global Transcriptome Using Illumina Paired-End Sequencing and Development of EST-SSR Markers
por: Li, Hui, et al.
Publicado: (2016)

Mining and characterization of novel EST-SSR markers of Parrotia subaequalis (Hamamelidaceae) from the first Illumina-based transcriptome datasets
por: Zhang, Yunyan, et al.
Publicado: (2019)

Corrigendum: De novo Assembly and Characterization of the Testis Transcriptome and Development of EST-SSR Markers in the Cockroach Periplaneta americana
por: Chen, Wan, et al.
Publicado: (2015)

Development of novel EST-SSR markers for ploidy identification based on de novo transcriptome assembly for Misgurnus anguillicaudatus
por: Feng, Bing, et al.
Publicado: (2018)

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers
por: Wei, Wenliang, et al.
Publicado: (2011)

Exploiting Illumina Sequencing for the Development of 95 Novel Polymorphic EST-SSR Markers in Common Vetch (Vicia sativa subsp. sativa)
por: Liu, Zhipeng, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_4sij5tpuo2n085epbmm2ehh9p2