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Geometrically programmed self-limited assembly of tubules using DNA origami colloids

Self-assembly is one of the most promising strategies for making functional materials at the nanoscale, yet new design principles for making self-limiting architectures, rather than spatially unlimited periodic lattice structures, are needed. To address this challenge, we explore the tradeoffs betwe...

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Autores principales: Hayakawa, Daichi, Videbaek, Thomas E., Hall, Douglas M., Fang, Huang, Sigl, Christian, Feigl, Elija, Dietz, Hendrik, Fraden, Seth, Hagan, Michael F., Grason, Gregory M., Rogers, W. Benjamin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9618141/
https://www.ncbi.nlm.nih.gov/pubmed/36252043
http://dx.doi.org/10.1073/pnas.2207902119
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author Hayakawa, Daichi
Videbaek, Thomas E.
Hall, Douglas M.
Fang, Huang
Sigl, Christian
Feigl, Elija
Dietz, Hendrik
Fraden, Seth
Hagan, Michael F.
Grason, Gregory M.
Rogers, W. Benjamin
author_facet Hayakawa, Daichi
Videbaek, Thomas E.
Hall, Douglas M.
Fang, Huang
Sigl, Christian
Feigl, Elija
Dietz, Hendrik
Fraden, Seth
Hagan, Michael F.
Grason, Gregory M.
Rogers, W. Benjamin
author_sort Hayakawa, Daichi
collection PubMed
description Self-assembly is one of the most promising strategies for making functional materials at the nanoscale, yet new design principles for making self-limiting architectures, rather than spatially unlimited periodic lattice structures, are needed. To address this challenge, we explore the tradeoffs between addressable assembly and self-closing assembly of a specific class of self-limiting structures: cylindrical tubules. We make triangular subunits using DNA origami that have specific, valence-limited interactions and designed binding angles, and we study their assembly into tubules that have a self-limited width that is much larger than the size of an individual subunit. In the simplest case, the tubules are assembled from a single component by geometrically programming the dihedral angles between neighboring subunits. We show that the tubules can reach many micrometers in length and that their average width can be prescribed through the dihedral angles. We find that there is a distribution in the width and the chirality of the tubules, which we rationalize by developing a model that considers the finite bending rigidity of the assembled structure as well as the mechanism of self-closure. Finally, we demonstrate that the distributions of tubules can be further sculpted by increasing the number of subunit species, thereby increasing the assembly complexity, and demonstrate that using two subunit species successfully reduces the number of available end states by half. These results help to shed light on the roles of assembly complexity and geometry in self-limited assembly and could be extended to other self-limiting architectures, such as shells, toroids, or triply periodic frameworks.
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spelling pubmed-96181412022-10-31 Geometrically programmed self-limited assembly of tubules using DNA origami colloids Hayakawa, Daichi Videbaek, Thomas E. Hall, Douglas M. Fang, Huang Sigl, Christian Feigl, Elija Dietz, Hendrik Fraden, Seth Hagan, Michael F. Grason, Gregory M. Rogers, W. Benjamin Proc Natl Acad Sci U S A Physical Sciences Self-assembly is one of the most promising strategies for making functional materials at the nanoscale, yet new design principles for making self-limiting architectures, rather than spatially unlimited periodic lattice structures, are needed. To address this challenge, we explore the tradeoffs between addressable assembly and self-closing assembly of a specific class of self-limiting structures: cylindrical tubules. We make triangular subunits using DNA origami that have specific, valence-limited interactions and designed binding angles, and we study their assembly into tubules that have a self-limited width that is much larger than the size of an individual subunit. In the simplest case, the tubules are assembled from a single component by geometrically programming the dihedral angles between neighboring subunits. We show that the tubules can reach many micrometers in length and that their average width can be prescribed through the dihedral angles. We find that there is a distribution in the width and the chirality of the tubules, which we rationalize by developing a model that considers the finite bending rigidity of the assembled structure as well as the mechanism of self-closure. Finally, we demonstrate that the distributions of tubules can be further sculpted by increasing the number of subunit species, thereby increasing the assembly complexity, and demonstrate that using two subunit species successfully reduces the number of available end states by half. These results help to shed light on the roles of assembly complexity and geometry in self-limited assembly and could be extended to other self-limiting architectures, such as shells, toroids, or triply periodic frameworks. National Academy of Sciences 2022-10-17 2022-10-25 /pmc/articles/PMC9618141/ /pubmed/36252043 http://dx.doi.org/10.1073/pnas.2207902119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Hayakawa, Daichi
Videbaek, Thomas E.
Hall, Douglas M.
Fang, Huang
Sigl, Christian
Feigl, Elija
Dietz, Hendrik
Fraden, Seth
Hagan, Michael F.
Grason, Gregory M.
Rogers, W. Benjamin
Geometrically programmed self-limited assembly of tubules using DNA origami colloids
title Geometrically programmed self-limited assembly of tubules using DNA origami colloids
title_full Geometrically programmed self-limited assembly of tubules using DNA origami colloids
title_fullStr Geometrically programmed self-limited assembly of tubules using DNA origami colloids
title_full_unstemmed Geometrically programmed self-limited assembly of tubules using DNA origami colloids
title_short Geometrically programmed self-limited assembly of tubules using DNA origami colloids
title_sort geometrically programmed self-limited assembly of tubules using dna origami colloids
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9618141/
https://www.ncbi.nlm.nih.gov/pubmed/36252043
http://dx.doi.org/10.1073/pnas.2207902119
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