Cargando…
Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)
Carallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621227/ https://www.ncbi.nlm.nih.gov/pubmed/36325279 http://dx.doi.org/10.1080/23802359.2022.2135398 |
_version_ | 1784821495476781056 |
---|---|
author | Wang, Renjie Liao, Nanyan Liu, Xiongsheng Qin, Yi Xiao, Yufei Wang, Yong Huang, Ronglin |
author_facet | Wang, Renjie Liao, Nanyan Liu, Xiongsheng Qin, Yi Xiao, Yufei Wang, Yong Huang, Ronglin |
author_sort | Wang, Renjie |
collection | PubMed |
description | Carallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single copy (LSC) of 89,556 bp and a small single copy (SSC) of 18,814 bp, separated a pair of inverted repeats (IRb and IRa) of 26,841 bp. The overall GC content is 36.4%. A total of 130 genes are annotated, including 83 protein-coding genes, 37 tRNAs, eight rRNAs and two pseudogenes (ψycf1 and ψrps19). The phylogenetic analysis indicated that C. diplopetala and C. brachiate formed a monophyletic clade with strong support and then sister to Pellacalyx yunnanensis. The plastome of C. diplopetala will provide informative genomic resources for further conservation applications. |
format | Online Article Text |
id | pubmed-9621227 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-96212272022-11-01 Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) Wang, Renjie Liao, Nanyan Liu, Xiongsheng Qin, Yi Xiao, Yufei Wang, Yong Huang, Ronglin Mitochondrial DNA B Resour Plastome Announcement Carallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single copy (LSC) of 89,556 bp and a small single copy (SSC) of 18,814 bp, separated a pair of inverted repeats (IRb and IRa) of 26,841 bp. The overall GC content is 36.4%. A total of 130 genes are annotated, including 83 protein-coding genes, 37 tRNAs, eight rRNAs and two pseudogenes (ψycf1 and ψrps19). The phylogenetic analysis indicated that C. diplopetala and C. brachiate formed a monophyletic clade with strong support and then sister to Pellacalyx yunnanensis. The plastome of C. diplopetala will provide informative genomic resources for further conservation applications. Taylor & Francis 2022-10-27 /pmc/articles/PMC9621227/ /pubmed/36325279 http://dx.doi.org/10.1080/23802359.2022.2135398 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Wang, Renjie Liao, Nanyan Liu, Xiongsheng Qin, Yi Xiao, Yufei Wang, Yong Huang, Ronglin Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
title | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
title_full | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
title_fullStr | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
title_short | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
title_sort | characterization of the complete chloroplast genome of carallia diplopetala (rhizophoraceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621227/ https://www.ncbi.nlm.nih.gov/pubmed/36325279 http://dx.doi.org/10.1080/23802359.2022.2135398 |
work_keys_str_mv | AT wangrenjie characterizationofthecompletechloroplastgenomeofcaralliadiplopetalarhizophoraceae AT liaonanyan characterizationofthecompletechloroplastgenomeofcaralliadiplopetalarhizophoraceae AT liuxiongsheng characterizationofthecompletechloroplastgenomeofcaralliadiplopetalarhizophoraceae AT qinyi characterizationofthecompletechloroplastgenomeofcaralliadiplopetalarhizophoraceae AT xiaoyufei characterizationofthecompletechloroplastgenomeofcaralliadiplopetalarhizophoraceae AT wangyong characterizationofthecompletechloroplastgenomeofcaralliadiplopetalarhizophoraceae AT huangronglin characterizationofthecompletechloroplastgenomeofcaralliadiplopetalarhizophoraceae |