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Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)

Carallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single...

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Autores principales: Wang, Renjie, Liao, Nanyan, Liu, Xiongsheng, Qin, Yi, Xiao, Yufei, Wang, Yong, Huang, Ronglin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621227/
https://www.ncbi.nlm.nih.gov/pubmed/36325279
http://dx.doi.org/10.1080/23802359.2022.2135398
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author Wang, Renjie
Liao, Nanyan
Liu, Xiongsheng
Qin, Yi
Xiao, Yufei
Wang, Yong
Huang, Ronglin
author_facet Wang, Renjie
Liao, Nanyan
Liu, Xiongsheng
Qin, Yi
Xiao, Yufei
Wang, Yong
Huang, Ronglin
author_sort Wang, Renjie
collection PubMed
description Carallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single copy (LSC) of 89,556 bp and a small single copy (SSC) of 18,814 bp, separated a pair of inverted repeats (IRb and IRa) of 26,841 bp. The overall GC content is 36.4%. A total of 130 genes are annotated, including 83 protein-coding genes, 37 tRNAs, eight rRNAs and two pseudogenes (ψycf1 and ψrps19). The phylogenetic analysis indicated that C. diplopetala and C. brachiate formed a monophyletic clade with strong support and then sister to Pellacalyx yunnanensis. The plastome of C. diplopetala will provide informative genomic resources for further conservation applications.
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spelling pubmed-96212272022-11-01 Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) Wang, Renjie Liao, Nanyan Liu, Xiongsheng Qin, Yi Xiao, Yufei Wang, Yong Huang, Ronglin Mitochondrial DNA B Resour Plastome Announcement Carallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single copy (LSC) of 89,556 bp and a small single copy (SSC) of 18,814 bp, separated a pair of inverted repeats (IRb and IRa) of 26,841 bp. The overall GC content is 36.4%. A total of 130 genes are annotated, including 83 protein-coding genes, 37 tRNAs, eight rRNAs and two pseudogenes (ψycf1 and ψrps19). The phylogenetic analysis indicated that C. diplopetala and C. brachiate formed a monophyletic clade with strong support and then sister to Pellacalyx yunnanensis. The plastome of C. diplopetala will provide informative genomic resources for further conservation applications. Taylor & Francis 2022-10-27 /pmc/articles/PMC9621227/ /pubmed/36325279 http://dx.doi.org/10.1080/23802359.2022.2135398 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Wang, Renjie
Liao, Nanyan
Liu, Xiongsheng
Qin, Yi
Xiao, Yufei
Wang, Yong
Huang, Ronglin
Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)
title Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)
title_full Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)
title_fullStr Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)
title_short Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)
title_sort characterization of the complete chloroplast genome of carallia diplopetala (rhizophoraceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621227/
https://www.ncbi.nlm.nih.gov/pubmed/36325279
http://dx.doi.org/10.1080/23802359.2022.2135398
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