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The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae)

The chloroplast (cp) genome sequence is determined and analyzed for Orostachys minuta for the first time. The cp genome was 150,369 bp in length, containing a large single-copy (LSC) of 82,795 bp and a small single-copy (SSC) of 16,854 bp, which were separated by a pair of 25,360 bp inverted repeats...

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Autores principales: Lee, Ha-Rim, Kim, Bo-Yun, Kang, Halam, An, Sung-Mo, Kim, Kyung-Ah, Cheon, Kyeong-Sik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621228/
https://www.ncbi.nlm.nih.gov/pubmed/36325294
http://dx.doi.org/10.1080/23802359.2022.2133556
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author Lee, Ha-Rim
Kim, Bo-Yun
Kang, Halam
An, Sung-Mo
Kim, Kyung-Ah
Cheon, Kyeong-Sik
author_facet Lee, Ha-Rim
Kim, Bo-Yun
Kang, Halam
An, Sung-Mo
Kim, Kyung-Ah
Cheon, Kyeong-Sik
author_sort Lee, Ha-Rim
collection PubMed
description The chloroplast (cp) genome sequence is determined and analyzed for Orostachys minuta for the first time. The cp genome was 150,369 bp in length, containing a large single-copy (LSC) of 82,795 bp and a small single-copy (SSC) of 16,854 bp, which were separated by a pair of 25,360 bp inverted repeats (IRs). The overall G + C content of the O. minuta cp genome amounted to 37.7%. In total, 113 unique genes were annotated, consisting of 79 protein-coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Among these genes, 18 contained one or two introns. A maximum-likelihood (ML) phylogenetic analysis based on 33 taxa showed that O. minuta formed a clade with O. japonica. This study will provide a baseline as well as valuable molecular phylogenomic information for various future studies to determine the taxonomic position and phylogenetic relationships of the genus Orostachys.
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spelling pubmed-96212282022-11-01 The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae) Lee, Ha-Rim Kim, Bo-Yun Kang, Halam An, Sung-Mo Kim, Kyung-Ah Cheon, Kyeong-Sik Mitochondrial DNA B Resour Plastome Announcement The chloroplast (cp) genome sequence is determined and analyzed for Orostachys minuta for the first time. The cp genome was 150,369 bp in length, containing a large single-copy (LSC) of 82,795 bp and a small single-copy (SSC) of 16,854 bp, which were separated by a pair of 25,360 bp inverted repeats (IRs). The overall G + C content of the O. minuta cp genome amounted to 37.7%. In total, 113 unique genes were annotated, consisting of 79 protein-coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Among these genes, 18 contained one or two introns. A maximum-likelihood (ML) phylogenetic analysis based on 33 taxa showed that O. minuta formed a clade with O. japonica. This study will provide a baseline as well as valuable molecular phylogenomic information for various future studies to determine the taxonomic position and phylogenetic relationships of the genus Orostachys. Taylor & Francis 2022-10-25 /pmc/articles/PMC9621228/ /pubmed/36325294 http://dx.doi.org/10.1080/23802359.2022.2133556 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Lee, Ha-Rim
Kim, Bo-Yun
Kang, Halam
An, Sung-Mo
Kim, Kyung-Ah
Cheon, Kyeong-Sik
The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae)
title The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae)
title_full The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae)
title_fullStr The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae)
title_full_unstemmed The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae)
title_short The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae)
title_sort complete chloroplast genome sequence of orostachys minuta (crassulaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621228/
https://www.ncbi.nlm.nih.gov/pubmed/36325294
http://dx.doi.org/10.1080/23802359.2022.2133556
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