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The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae)
The chloroplast (cp) genome sequence is determined and analyzed for Orostachys minuta for the first time. The cp genome was 150,369 bp in length, containing a large single-copy (LSC) of 82,795 bp and a small single-copy (SSC) of 16,854 bp, which were separated by a pair of 25,360 bp inverted repeats...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621228/ https://www.ncbi.nlm.nih.gov/pubmed/36325294 http://dx.doi.org/10.1080/23802359.2022.2133556 |
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author | Lee, Ha-Rim Kim, Bo-Yun Kang, Halam An, Sung-Mo Kim, Kyung-Ah Cheon, Kyeong-Sik |
author_facet | Lee, Ha-Rim Kim, Bo-Yun Kang, Halam An, Sung-Mo Kim, Kyung-Ah Cheon, Kyeong-Sik |
author_sort | Lee, Ha-Rim |
collection | PubMed |
description | The chloroplast (cp) genome sequence is determined and analyzed for Orostachys minuta for the first time. The cp genome was 150,369 bp in length, containing a large single-copy (LSC) of 82,795 bp and a small single-copy (SSC) of 16,854 bp, which were separated by a pair of 25,360 bp inverted repeats (IRs). The overall G + C content of the O. minuta cp genome amounted to 37.7%. In total, 113 unique genes were annotated, consisting of 79 protein-coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Among these genes, 18 contained one or two introns. A maximum-likelihood (ML) phylogenetic analysis based on 33 taxa showed that O. minuta formed a clade with O. japonica. This study will provide a baseline as well as valuable molecular phylogenomic information for various future studies to determine the taxonomic position and phylogenetic relationships of the genus Orostachys. |
format | Online Article Text |
id | pubmed-9621228 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-96212282022-11-01 The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae) Lee, Ha-Rim Kim, Bo-Yun Kang, Halam An, Sung-Mo Kim, Kyung-Ah Cheon, Kyeong-Sik Mitochondrial DNA B Resour Plastome Announcement The chloroplast (cp) genome sequence is determined and analyzed for Orostachys minuta for the first time. The cp genome was 150,369 bp in length, containing a large single-copy (LSC) of 82,795 bp and a small single-copy (SSC) of 16,854 bp, which were separated by a pair of 25,360 bp inverted repeats (IRs). The overall G + C content of the O. minuta cp genome amounted to 37.7%. In total, 113 unique genes were annotated, consisting of 79 protein-coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Among these genes, 18 contained one or two introns. A maximum-likelihood (ML) phylogenetic analysis based on 33 taxa showed that O. minuta formed a clade with O. japonica. This study will provide a baseline as well as valuable molecular phylogenomic information for various future studies to determine the taxonomic position and phylogenetic relationships of the genus Orostachys. Taylor & Francis 2022-10-25 /pmc/articles/PMC9621228/ /pubmed/36325294 http://dx.doi.org/10.1080/23802359.2022.2133556 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Lee, Ha-Rim Kim, Bo-Yun Kang, Halam An, Sung-Mo Kim, Kyung-Ah Cheon, Kyeong-Sik The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae) |
title | The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae) |
title_full | The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae) |
title_fullStr | The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae) |
title_short | The complete chloroplast genome sequence of Orostachys minuta (Crassulaceae) |
title_sort | complete chloroplast genome sequence of orostachys minuta (crassulaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621228/ https://www.ncbi.nlm.nih.gov/pubmed/36325294 http://dx.doi.org/10.1080/23802359.2022.2133556 |
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