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A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer
Background: Cervical cancer (CC) is a serious threat to women populations worldwide. Lipid metabolism is believed to have modulating functions in cancer. Long non-coding RNAs (lncRNAs) are potential biomarkers for the different tumor prognosis. Our work aims at investigating the prognostic value of...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621320/ https://www.ncbi.nlm.nih.gov/pubmed/36324514 http://dx.doi.org/10.3389/fgene.2022.1001347 |
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author | Lu, Yanzhen He, Xiujun Fang, Xia Chai, Ningxia Xu, Fangfang |
author_facet | Lu, Yanzhen He, Xiujun Fang, Xia Chai, Ningxia Xu, Fangfang |
author_sort | Lu, Yanzhen |
collection | PubMed |
description | Background: Cervical cancer (CC) is a serious threat to women populations worldwide. Lipid metabolism is believed to have modulating functions in cancer. Long non-coding RNAs (lncRNAs) are potential biomarkers for the different tumor prognosis. Our work aims at investigating the prognostic value of lipid metabolism-related lncRNAs in CC. Methods: LncRNA expression profiling was conducted in 291 patients from The Cancer Genome Atlas (TCGA). Patient samples were randomly assigned to the training or testing set in a 3:2 ratio. A novel lipid metabolism-related five-lncRNA signature with prognostic value for CC was built through the univariate Cox regression, least absolute contraction and selection operator (LASSO) regression and multivariate Cox regression analyses, and was further evaluated by the Kaplan-Meier methods. Relevant analyses were also applied to identify the independent clinicopathological factors. GO and KEGG analyses were conducted to investigate the biological functions and molecular pathways. Immune infiltration analysis was included to probe the relationship between lncRNA signature and cancer cell microenvironment. Results: The novel lipid metabolism-related five-lncRNA signature was confirmed to be predictive of overall survival (OS) in CC patients. Risk score, cancer stage, pregnancy, and BMI were validated as independent factors with prognostic value. GO and KEGG indicated that lipid metabolism participated in several tumor associated functions and pathways. Moreover, our results suggested that the five-lncRNA expression has potential link with tumor immune microenvironment. Conclusion: In conclusion, we built an innovative prognostic risk signature based upon lipid metabolism-related lncRNAs. The five-lncRNA signature may be beneficial to provide novel potential therapeutic targets and improve personalized treatment strategies for CC patients in future clinical treatments. |
format | Online Article Text |
id | pubmed-9621320 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96213202022-11-01 A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer Lu, Yanzhen He, Xiujun Fang, Xia Chai, Ningxia Xu, Fangfang Front Genet Genetics Background: Cervical cancer (CC) is a serious threat to women populations worldwide. Lipid metabolism is believed to have modulating functions in cancer. Long non-coding RNAs (lncRNAs) are potential biomarkers for the different tumor prognosis. Our work aims at investigating the prognostic value of lipid metabolism-related lncRNAs in CC. Methods: LncRNA expression profiling was conducted in 291 patients from The Cancer Genome Atlas (TCGA). Patient samples were randomly assigned to the training or testing set in a 3:2 ratio. A novel lipid metabolism-related five-lncRNA signature with prognostic value for CC was built through the univariate Cox regression, least absolute contraction and selection operator (LASSO) regression and multivariate Cox regression analyses, and was further evaluated by the Kaplan-Meier methods. Relevant analyses were also applied to identify the independent clinicopathological factors. GO and KEGG analyses were conducted to investigate the biological functions and molecular pathways. Immune infiltration analysis was included to probe the relationship between lncRNA signature and cancer cell microenvironment. Results: The novel lipid metabolism-related five-lncRNA signature was confirmed to be predictive of overall survival (OS) in CC patients. Risk score, cancer stage, pregnancy, and BMI were validated as independent factors with prognostic value. GO and KEGG indicated that lipid metabolism participated in several tumor associated functions and pathways. Moreover, our results suggested that the five-lncRNA expression has potential link with tumor immune microenvironment. Conclusion: In conclusion, we built an innovative prognostic risk signature based upon lipid metabolism-related lncRNAs. The five-lncRNA signature may be beneficial to provide novel potential therapeutic targets and improve personalized treatment strategies for CC patients in future clinical treatments. Frontiers Media S.A. 2022-10-17 /pmc/articles/PMC9621320/ /pubmed/36324514 http://dx.doi.org/10.3389/fgene.2022.1001347 Text en Copyright © 2022 Lu, He, Fang, Chai and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Lu, Yanzhen He, Xiujun Fang, Xia Chai, Ningxia Xu, Fangfang A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer |
title | A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer |
title_full | A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer |
title_fullStr | A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer |
title_full_unstemmed | A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer |
title_short | A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer |
title_sort | novel lipid metabolism-related lncrna signature predictive of clinical prognosis in cervical cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9621320/ https://www.ncbi.nlm.nih.gov/pubmed/36324514 http://dx.doi.org/10.3389/fgene.2022.1001347 |
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