Cargando…

Reducing computational cost of large-scale genomic evaluation by using indirect genomic prediction

Over half a million Holsteins are being genotyped annually in the United States. The computational cost of including all genotypes in single-step genomic (ssG)BLUP is high, although it is feasible to conduct large-scale genomic prediction using an efficient algorithm such as APY (algorithm for prove...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tsuruta, S., Lourenco, D.A.L., Masuda, Y., Lawlor, T.J., Misztal, I.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2021
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9623783/ https://www.ncbi.nlm.nih.gov/pubmed/36337117 http://dx.doi.org/10.3168/jdsc.2021-0097

Ejemplares similares

Indirect predictions with a large number of genotyped animals using the algorithm for proven and young
por: Garcia, Andre L S, et al.
Publicado: (2020)

Derivation of indirect predictions using genomic recursions across generations in a broiler population
por: Hidalgo, Jorge, et al.
Publicado: (2023)

Core-dependent changes in genomic predictions using the Algorithm for Proven and Young in single-step genomic best linear unbiased prediction
por: Misztal, Ignacy, et al.
Publicado: (2020)

The importance of historically popular sires on the accuracy of genomic predictions of young animals in the US Holstein population
por: Steyn, Yvette, et al.
Publicado: (2023)

Metafounders May Reduce Bias in Composite Cattle Genomic Predictions
por: Kluska, Sabrina, et al.
Publicado: (2021)

Investigating the persistence of accuracy of genomic predictions over time in broilers
por: Hidalgo, Jorge, et al.
Publicado: (2021)

Changes in genomic predictions when new information is added
por: Hidalgo, Jorge, et al.
Publicado: (2021)

Genomic evaluation with multibreed and crossbred data
por: Misztal, I., et al.
Publicado: (2022)

Changes in genetic parameters for fitness and growth traits in pigs under genomic selection
por: Hidalgo, Jorge, et al.
Publicado: (2020)

Relationships among mortality, performance, and disorder traits in broiler chickens: a genetic and genomic approach
por: Zhang, X, et al.
Publicado: (2018)

Efficient ways to combine data from broiler and layer chickens to account for sequential genomic selection
por: Hidalgo, Jorge, et al.
Publicado: (2023)

Detecting effective starting point of genomic selection by divergent trends from best linear unbiased prediction and single-step genomic best linear unbiased prediction in pigs, beef cattle, and broilers
por: Abdollahi-Arpanahi, Rostam, et al.
Publicado: (2021)

Dimensionality of genomic information and its impact on genome-wide associations and variant selection for genomic prediction: a simulation study
por: Jang, Sungbong, et al.
Publicado: (2023)

Impact of blending the genomic relationship matrix with different levels of pedigree relationships or the identity matrix on genetic evaluations
por: Hollifield, Mary Kate, et al.
Publicado: (2022)

Theoretical accuracy for indirect predictions based on SNP effects from single-step GBLUP
por: Garcia, Andre, et al.
Publicado: (2022)

Is single-step genomic REML with the algorithm for proven and young more computationally efficient when less generations of data are present?
por: Junqueira, Vinícius Silva, et al.
Publicado: (2022)

Weighting Strategies for Single-Step Genomic BLUP: An Iterative Approach for Accurate Calculation of GEBV and GWAS
por: Zhang, Xinyue, et al.
Publicado: (2016)

Correction: Theoretical accuracy for indirect predictions based on SNP effects from single-step GBLUP
por: Garcia, Andre, et al.
Publicado: (2023)

The Dimensionality of Genomic Information and Its Effect on Genomic Prediction
por: Pocrnic, Ivan, et al.
Publicado: (2016)

Frequentist p-values for large-scale-single step genome-wide association, with an application to birth weight in American Angus cattle
por: Aguilar, Ignacio, et al.
Publicado: (2019)

Single-Step Genomic Evaluations from Theory to Practice: Using SNP Chips and Sequence Data in BLUPF90
por: Lourenco, Daniela, et al.
Publicado: (2020)

Hardy-Weinberg Equilibrium in the Large Scale Genomic Sequencing Era
por: Abramovs, Nikita, et al.
Publicado: (2020)

Efficient approximation of reliabilities for single-step genomic best linear unbiased predictor models with the Algorithm for Proven and Young
por: Bermann, Matias, et al.
Publicado: (2021)

Emerging issues in genomic selection
por: Misztal, Ignacy, et al.
Publicado: (2021)

Development of genomic predictions for harvest and carcass weight in channel catfish
por: Garcia, Andre L. S., et al.
Publicado: (2018)

Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs
por: Jang, Sungbong, et al.
Publicado: (2023)

Studies on changes of estimated breeding values of U.S. Holstein bulls for final score from the first to second crop of daughters
por: Koduru, V. K. R., et al.
Publicado: (2010)

Multi-line ssGBLUP evaluation using preselected markers from whole-genome sequence data in pigs
por: Jang, Sungbong, et al.
Publicado: (2023)

Genetical Genomics Reveals Large Scale Genotype-By-Environment Interactions in Arabidopsis thaliana
por: Snoek, L. Basten, et al.
Publicado: (2013)

A Large-Scale Genome-Wide Association Study in U.S. Holstein Cattle
por: Jiang, Jicai, et al.
Publicado: (2019)

Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models
por: Vallejo, Roger L., et al.
Publicado: (2016)

Determining the stability of accuracy of genomic estimated breeding values in future generations in commercial pig populations
por: Hollifield, Mary Kate, et al.
Publicado: (2021)

In-depth analysis of large-scale screening of WRKY members based on genome-wide identification
por: Pan, Haoyu, et al.
Publicado: (2023)

Impact of including the cause of missing records on genetic evaluations for growth in commercial pigs
por: Hollifield, Mary Kate, et al.
Publicado: (2021)

Boundaries for genotype, phenotype, and pedigree truncation in genomic evaluations in pigs
por: Bussiman, Fernando, et al.
Publicado: (2023)

Towards a Cost-Effective Implementation of Genomic Prediction Based on Low Coverage Whole Genome Sequencing in Dezhou Donkey
por: Zhao, Changheng, et al.
Publicado: (2021)

An Efficient Computational Model for Large-Scale Prediction of Protein–Protein Interactions Based on Accurate and Scalable Graph Embedding
por: Su, Xiao-Rui, et al.
Publicado: (2021)

Efficient large-scale single-step evaluations and indirect genomic prediction of genotyped selection candidates
por: Vandenplas, Jeremie, et al.
Publicado: (2023)

Accuracy of genomic BLUP when considering a genomic relationship matrix based on the number of the largest eigenvalues: a simulation study
por: Pocrnic, Ivan, et al.
Publicado: (2019)

Copy number variation analysis in the context of electronic medical records and large-scale genomics consortium efforts
por: Connolly, John J., et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_goei0t84gsh1r8upf8oljmrlr3