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KRAS is a prognostic biomarker associated with diagnosis and treatment in multiple cancers
KRAS encodes K-Ras proteins, which take part in the MAPK pathway. The expression level of KRAS is high in tumor patients. Our study compared KRAS expression levels between 33 kinds of tumor tissues. Additionally, we studied the association of KRAS expression levels with diagnostic and prognostic val...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9624065/ https://www.ncbi.nlm.nih.gov/pubmed/36330448 http://dx.doi.org/10.3389/fgene.2022.1024920 |
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author | Zhao, Da Wang, Lizhuang Chen, Zheng Zhang, Lijun Xu, Lei |
author_facet | Zhao, Da Wang, Lizhuang Chen, Zheng Zhang, Lijun Xu, Lei |
author_sort | Zhao, Da |
collection | PubMed |
description | KRAS encodes K-Ras proteins, which take part in the MAPK pathway. The expression level of KRAS is high in tumor patients. Our study compared KRAS expression levels between 33 kinds of tumor tissues. Additionally, we studied the association of KRAS expression levels with diagnostic and prognostic values, clinicopathological features, and tumor immunity. We established 22 immune-infiltrating cell expression datasets to calculate immune and stromal scores to evaluate the tumor microenvironment. KRAS genes, immune check-point genes and interacting genes were selected to construct the PPI network. We selected 79 immune checkpoint genes and interacting related genes to calculate the correlation. Based on the 33 tumor expression datasets, we conducted GSEA (genome set enrichment analysis) to show the KRAS and other co-expressed genes associated with cancers. KRAS may be a reliable prognostic biomarker in the diagnosis of cancer patients and has the potential to be included in cancer-targeted drugs. |
format | Online Article Text |
id | pubmed-9624065 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96240652022-11-02 KRAS is a prognostic biomarker associated with diagnosis and treatment in multiple cancers Zhao, Da Wang, Lizhuang Chen, Zheng Zhang, Lijun Xu, Lei Front Genet Genetics KRAS encodes K-Ras proteins, which take part in the MAPK pathway. The expression level of KRAS is high in tumor patients. Our study compared KRAS expression levels between 33 kinds of tumor tissues. Additionally, we studied the association of KRAS expression levels with diagnostic and prognostic values, clinicopathological features, and tumor immunity. We established 22 immune-infiltrating cell expression datasets to calculate immune and stromal scores to evaluate the tumor microenvironment. KRAS genes, immune check-point genes and interacting genes were selected to construct the PPI network. We selected 79 immune checkpoint genes and interacting related genes to calculate the correlation. Based on the 33 tumor expression datasets, we conducted GSEA (genome set enrichment analysis) to show the KRAS and other co-expressed genes associated with cancers. KRAS may be a reliable prognostic biomarker in the diagnosis of cancer patients and has the potential to be included in cancer-targeted drugs. Frontiers Media S.A. 2022-10-18 /pmc/articles/PMC9624065/ /pubmed/36330448 http://dx.doi.org/10.3389/fgene.2022.1024920 Text en Copyright © 2022 Zhao, Wang, Chen, Zhang and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Zhao, Da Wang, Lizhuang Chen, Zheng Zhang, Lijun Xu, Lei KRAS is a prognostic biomarker associated with diagnosis and treatment in multiple cancers |
title | KRAS is a prognostic biomarker associated with diagnosis and treatment in multiple cancers |
title_full | KRAS is a prognostic biomarker associated with diagnosis and treatment in multiple cancers |
title_fullStr | KRAS is a prognostic biomarker associated with diagnosis and treatment in multiple cancers |
title_full_unstemmed | KRAS is a prognostic biomarker associated with diagnosis and treatment in multiple cancers |
title_short | KRAS is a prognostic biomarker associated with diagnosis and treatment in multiple cancers |
title_sort | kras is a prognostic biomarker associated with diagnosis and treatment in multiple cancers |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9624065/ https://www.ncbi.nlm.nih.gov/pubmed/36330448 http://dx.doi.org/10.3389/fgene.2022.1024920 |
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