Cargando…

Extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from SAD data of protein crystals

Owing to the importance of the single-wavelength anomalous diffraction (SAD) technique, the recently developed |ρ|-based phasing algorithm (S (M,|ρ|)) incorporating the inner-pixel preservation (ipp) procedure [Rius & Torrelles (2021). Acta Cryst A77, 339–347] has been adapted to the determinati...

Descripción completa

Detalles Bibliográficos
Autores principales: Rius, Jordi, Torrelles, Xavier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9624180/
https://www.ncbi.nlm.nih.gov/pubmed/36318068
http://dx.doi.org/10.1107/S2053273322008622
_version_ 1784822176675790848
author Rius, Jordi
Torrelles, Xavier
author_facet Rius, Jordi
Torrelles, Xavier
author_sort Rius, Jordi
collection PubMed
description Owing to the importance of the single-wavelength anomalous diffraction (SAD) technique, the recently developed |ρ|-based phasing algorithm (S (M,|ρ|)) incorporating the inner-pixel preservation (ipp) procedure [Rius & Torrelles (2021). Acta Cryst A77, 339–347] has been adapted to the determination of anomalous scattering substructures and its applicability tested on a series of 12 representative experimental data sets, mostly retrieved from the Protein Data Bank. To give an idea of the suitability of the data sets, the main indicators measuring their quality are also given. The dominant anomalous scatterers are either SeMet or S atoms, or metals/clusters incorporated by soaking. The resulting SAD-adapted algorithm solves the substructures of the test protein crystals quite efficiently.
format Online
Article
Text
id pubmed-9624180
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-96241802022-11-14 Extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from SAD data of protein crystals Rius, Jordi Torrelles, Xavier Acta Crystallogr A Found Adv Research Papers Owing to the importance of the single-wavelength anomalous diffraction (SAD) technique, the recently developed |ρ|-based phasing algorithm (S (M,|ρ|)) incorporating the inner-pixel preservation (ipp) procedure [Rius & Torrelles (2021). Acta Cryst A77, 339–347] has been adapted to the determination of anomalous scattering substructures and its applicability tested on a series of 12 representative experimental data sets, mostly retrieved from the Protein Data Bank. To give an idea of the suitability of the data sets, the main indicators measuring their quality are also given. The dominant anomalous scatterers are either SeMet or S atoms, or metals/clusters incorporated by soaking. The resulting SAD-adapted algorithm solves the substructures of the test protein crystals quite efficiently. International Union of Crystallography 2022-10-10 /pmc/articles/PMC9624180/ /pubmed/36318068 http://dx.doi.org/10.1107/S2053273322008622 Text en © Rius and Torrelles 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Rius, Jordi
Torrelles, Xavier
Extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from SAD data of protein crystals
title Extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from SAD data of protein crystals
title_full Extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from SAD data of protein crystals
title_fullStr Extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from SAD data of protein crystals
title_full_unstemmed Extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from SAD data of protein crystals
title_short Extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from SAD data of protein crystals
title_sort extending the novel |ρ|-based phasing algorithm to the solution of anomalous scattering substructures from sad data of protein crystals
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9624180/
https://www.ncbi.nlm.nih.gov/pubmed/36318068
http://dx.doi.org/10.1107/S2053273322008622
work_keys_str_mv AT riusjordi extendingthenovelrbasedphasingalgorithmtothesolutionofanomalousscatteringsubstructuresfromsaddataofproteincrystals
AT torrellesxavier extendingthenovelrbasedphasingalgorithmtothesolutionofanomalousscatteringsubstructuresfromsaddataofproteincrystals