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LBSUN129 Adipose Tissue Analysis Toolkit (at-at): An Imagej Plugin For Automated Analysis Of Adipocyte Number, Size, And Pericellular Fibrosis In Histological Sections

Obesity-induced pathological expansion of white adipose tissue (WAT) involves adipocyte hypertrophy that occurs in tandem with the development of pericellular fibrosis. Other pathophysiological states, such as cancer and HIV, are also associated with fibrotic transformation of WAT depots. Aging, obe...

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Autores principales: Robino, Jacob J, Bu, Dawei, Field, Bianca C, Scherer, Philipp E, Roberts, Charles T, Varlamov, Oleg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9626946/
http://dx.doi.org/10.1210/jendso/bvac150.007
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author Robino, Jacob J
Bu, Dawei
Field, Bianca C
Scherer, Philipp E
Roberts, Charles T
Varlamov, Oleg
author_facet Robino, Jacob J
Bu, Dawei
Field, Bianca C
Scherer, Philipp E
Roberts, Charles T
Varlamov, Oleg
author_sort Robino, Jacob J
collection PubMed
description Obesity-induced pathological expansion of white adipose tissue (WAT) involves adipocyte hypertrophy that occurs in tandem with the development of pericellular fibrosis. Other pathophysiological states, such as cancer and HIV, are also associated with fibrotic transformation of WAT depots. Aging, obesity, inactivity, and estrogen deficiency are also associated with an increase in bone marrow adiposity. Disease-associated changes in WAT morphology are typically assessed using histochemical analysis of WAT sections. However, manual analysis of large histological sections of WAT or bone marrow adipose tissue can be very time-consuming, while digital tools for the analysis of adipocyte size and pericellular fibrosis are limited. In response to this need, we have developed the Adipose Tissue Analysis Toolkit (AT-AT), a plugin for the open-source image analysis software ImageJ. AT-AT employs both local and global differentials in pixel intensity to threshold background apart from adipocyte-free tissue without user input. The AT-AT accurately captures adipocyte perimeter, maximum diameter, minimum diameter, and density per square millimeter of tissue in histological sections stained with common histological dyes, and performs automatic analysis of adipocyte cross-sectional area as well as pericellular fibrosis. AT-AT enables fully-automated analysis of batches of histological images using either default or user-defined adipocyte detection parameters including minimum circularity as well as minimum and maximum cross-sectional area. Likewise, users may set parameters for the thresholding algorithms, including the number of localized thresholds to be calculated in each image. AT-AT's thresholding techniques confer uniquely high resistances to both false-negative and false-positive detection events by comparison to other open-source adipocyte analysis software. They also enable superior measurement of adipocyte morphology, especially in the case of low-magnification images. AT-AT features several quality-of-life features, including automatic summarization of batch-collected data, the implementation of its thresholding algorithms as independent ImageJ commands, and an optional histogram builder. AT-AT can enhance the rigor and reproducibility of adipose tissue research. AT-AT will become available as a plugin for ImageJ in the fall of 2022. Presentation: Sunday, June 12, 2022 12:30 p.m. - 2:30 p.m.
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spelling pubmed-96269462022-11-03 LBSUN129 Adipose Tissue Analysis Toolkit (at-at): An Imagej Plugin For Automated Analysis Of Adipocyte Number, Size, And Pericellular Fibrosis In Histological Sections Robino, Jacob J Bu, Dawei Field, Bianca C Scherer, Philipp E Roberts, Charles T Varlamov, Oleg J Endocr Soc Adipose Tissue, Appetite, & Obesity Obesity-induced pathological expansion of white adipose tissue (WAT) involves adipocyte hypertrophy that occurs in tandem with the development of pericellular fibrosis. Other pathophysiological states, such as cancer and HIV, are also associated with fibrotic transformation of WAT depots. Aging, obesity, inactivity, and estrogen deficiency are also associated with an increase in bone marrow adiposity. Disease-associated changes in WAT morphology are typically assessed using histochemical analysis of WAT sections. However, manual analysis of large histological sections of WAT or bone marrow adipose tissue can be very time-consuming, while digital tools for the analysis of adipocyte size and pericellular fibrosis are limited. In response to this need, we have developed the Adipose Tissue Analysis Toolkit (AT-AT), a plugin for the open-source image analysis software ImageJ. AT-AT employs both local and global differentials in pixel intensity to threshold background apart from adipocyte-free tissue without user input. The AT-AT accurately captures adipocyte perimeter, maximum diameter, minimum diameter, and density per square millimeter of tissue in histological sections stained with common histological dyes, and performs automatic analysis of adipocyte cross-sectional area as well as pericellular fibrosis. AT-AT enables fully-automated analysis of batches of histological images using either default or user-defined adipocyte detection parameters including minimum circularity as well as minimum and maximum cross-sectional area. Likewise, users may set parameters for the thresholding algorithms, including the number of localized thresholds to be calculated in each image. AT-AT's thresholding techniques confer uniquely high resistances to both false-negative and false-positive detection events by comparison to other open-source adipocyte analysis software. They also enable superior measurement of adipocyte morphology, especially in the case of low-magnification images. AT-AT features several quality-of-life features, including automatic summarization of batch-collected data, the implementation of its thresholding algorithms as independent ImageJ commands, and an optional histogram builder. AT-AT can enhance the rigor and reproducibility of adipose tissue research. AT-AT will become available as a plugin for ImageJ in the fall of 2022. Presentation: Sunday, June 12, 2022 12:30 p.m. - 2:30 p.m. Oxford University Press 2022-11-01 /pmc/articles/PMC9626946/ http://dx.doi.org/10.1210/jendso/bvac150.007 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the Endocrine Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Adipose Tissue, Appetite, & Obesity
Robino, Jacob J
Bu, Dawei
Field, Bianca C
Scherer, Philipp E
Roberts, Charles T
Varlamov, Oleg
LBSUN129 Adipose Tissue Analysis Toolkit (at-at): An Imagej Plugin For Automated Analysis Of Adipocyte Number, Size, And Pericellular Fibrosis In Histological Sections
title LBSUN129 Adipose Tissue Analysis Toolkit (at-at): An Imagej Plugin For Automated Analysis Of Adipocyte Number, Size, And Pericellular Fibrosis In Histological Sections
title_full LBSUN129 Adipose Tissue Analysis Toolkit (at-at): An Imagej Plugin For Automated Analysis Of Adipocyte Number, Size, And Pericellular Fibrosis In Histological Sections
title_fullStr LBSUN129 Adipose Tissue Analysis Toolkit (at-at): An Imagej Plugin For Automated Analysis Of Adipocyte Number, Size, And Pericellular Fibrosis In Histological Sections
title_full_unstemmed LBSUN129 Adipose Tissue Analysis Toolkit (at-at): An Imagej Plugin For Automated Analysis Of Adipocyte Number, Size, And Pericellular Fibrosis In Histological Sections
title_short LBSUN129 Adipose Tissue Analysis Toolkit (at-at): An Imagej Plugin For Automated Analysis Of Adipocyte Number, Size, And Pericellular Fibrosis In Histological Sections
title_sort lbsun129 adipose tissue analysis toolkit (at-at): an imagej plugin for automated analysis of adipocyte number, size, and pericellular fibrosis in histological sections
topic Adipose Tissue, Appetite, & Obesity
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9626946/
http://dx.doi.org/10.1210/jendso/bvac150.007
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