First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, Pterophyllum scalare

This research work is the first to ever sequence and perform a de novo assembly of the genome of the freshwater angelfish, Pterophyllum scalare . The final genome assembly consisted of 15,486 contigs and was 734.79 Mb in size with an 86.5% BUSCO score. Functional annotation of the genome revealed 24...

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Detalles Bibliográficos
Autor principal: Madireddy, Indeever
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Caltech Library 2022
Materias:
New Finding
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9627325/
https://www.ncbi.nlm.nih.gov/pubmed/36338153
http://dx.doi.org/10.17912/micropub.biology.000654
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author Madireddy, Indeever
author_facet Madireddy, Indeever
author_sort Madireddy, Indeever
collection PubMed
description This research work is the first to ever sequence and perform a de novo assembly of the genome of the freshwater angelfish, Pterophyllum scalare . The final genome assembly consisted of 15,486 contigs and was 734.79 Mb in size with an 86.5% BUSCO score. Functional annotation of the genome revealed 24,247 protein-coding sequences related to other fish species. 14,329 (59%) of the identified genes were orthologous to Archocentrus centrarchus , a closely related South American cichlid.
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spelling pubmed-96273252022-11-03 First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, Pterophyllum scalare Madireddy, Indeever MicroPubl Biol New Finding This research work is the first to ever sequence and perform a de novo assembly of the genome of the freshwater angelfish, Pterophyllum scalare . The final genome assembly consisted of 15,486 contigs and was 734.79 Mb in size with an 86.5% BUSCO score. Functional annotation of the genome revealed 24,247 protein-coding sequences related to other fish species. 14,329 (59%) of the identified genes were orthologous to Archocentrus centrarchus , a closely related South American cichlid. Caltech Library 2022-10-18 /pmc/articles/PMC9627325/ /pubmed/36338153 http://dx.doi.org/10.17912/micropub.biology.000654 Text en Copyright: © 2022 by the authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle New Finding
Madireddy, Indeever
First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, Pterophyllum scalare
title First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, Pterophyllum scalare
title_full First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, Pterophyllum scalare
title_fullStr First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, Pterophyllum scalare
title_full_unstemmed First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, Pterophyllum scalare
title_short First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, Pterophyllum scalare
title_sort first ever whole genome sequencing and de novo assembly of the freshwater angelfish, pterophyllum scalare
topic New Finding
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9627325/
https://www.ncbi.nlm.nih.gov/pubmed/36338153
http://dx.doi.org/10.17912/micropub.biology.000654
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