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Dementia risk prediction in individuals with mild cognitive impairment: a comparison of Cox regression and machine learning models

BACKGROUND: Cox proportional hazards regression models and machine learning models are widely used for predicting the risk of dementia. Existing comparisons of these models have mostly been based on empirical datasets and have yielded mixed results. This study examines the accuracy of various machin...

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Autores principales: Wang, Meng, Greenberg, Matthew, Forkert, Nils D., Chekouo, Thierry, Afriyie, Gabriel, Ismail, Zahinoor, Smith, Eric E., Sajobi, Tolulope T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9628121/
https://www.ncbi.nlm.nih.gov/pubmed/36324086
http://dx.doi.org/10.1186/s12874-022-01754-y
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author Wang, Meng
Greenberg, Matthew
Forkert, Nils D.
Chekouo, Thierry
Afriyie, Gabriel
Ismail, Zahinoor
Smith, Eric E.
Sajobi, Tolulope T.
author_facet Wang, Meng
Greenberg, Matthew
Forkert, Nils D.
Chekouo, Thierry
Afriyie, Gabriel
Ismail, Zahinoor
Smith, Eric E.
Sajobi, Tolulope T.
author_sort Wang, Meng
collection PubMed
description BACKGROUND: Cox proportional hazards regression models and machine learning models are widely used for predicting the risk of dementia. Existing comparisons of these models have mostly been based on empirical datasets and have yielded mixed results. This study examines the accuracy of various machine learning and of the Cox regression models for predicting time-to-event outcomes using Monte Carlo simulation in people with mild cognitive impairment (MCI). METHODS: The predictive accuracy of nine time-to-event regression and machine learning models were investigated. These models include Cox regression, penalized Cox regression (with Ridge, LASSO, and elastic net penalties), survival trees, random survival forests, survival support vector machines, artificial neural networks, and extreme gradient boosting. Simulation data were generated using study design and data characteristics of a clinical registry and a large community-based registry of patients with MCI. The predictive performance of these models was evaluated based on three-fold cross-validation via Harrell’s concordance index (c-index), integrated calibration index (ICI), and integrated brier score (IBS). RESULTS: Cox regression and machine learning model had comparable predictive accuracy across three different performance metrics and data-analytic conditions. The estimated c-index values for Cox regression, random survival forests, and extreme gradient boosting were 0.70, 0.69 and 0.70, respectively, when the data were generated from a Cox regression model in a large sample-size conditions. In contrast, the estimated c-index values for these models were 0.64, 0.64, and 0.65 when the data were generated from a random survival forest in a large sample size conditions. Both Cox regression and random survival forest had the lowest ICI values (0.12 for a large sample size and 0.18 for a small sample size) among all the investigated models regardless of sample size and data generating model. CONCLUSION: Cox regression models have comparable, and sometimes better predictive performance, than more complex machine learning models. We recommend that the choice among these models should be guided by important considerations for research hypotheses, model interpretability, and type of data. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-022-01754-y.
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spelling pubmed-96281212022-11-03 Dementia risk prediction in individuals with mild cognitive impairment: a comparison of Cox regression and machine learning models Wang, Meng Greenberg, Matthew Forkert, Nils D. Chekouo, Thierry Afriyie, Gabriel Ismail, Zahinoor Smith, Eric E. Sajobi, Tolulope T. BMC Med Res Methodol Research BACKGROUND: Cox proportional hazards regression models and machine learning models are widely used for predicting the risk of dementia. Existing comparisons of these models have mostly been based on empirical datasets and have yielded mixed results. This study examines the accuracy of various machine learning and of the Cox regression models for predicting time-to-event outcomes using Monte Carlo simulation in people with mild cognitive impairment (MCI). METHODS: The predictive accuracy of nine time-to-event regression and machine learning models were investigated. These models include Cox regression, penalized Cox regression (with Ridge, LASSO, and elastic net penalties), survival trees, random survival forests, survival support vector machines, artificial neural networks, and extreme gradient boosting. Simulation data were generated using study design and data characteristics of a clinical registry and a large community-based registry of patients with MCI. The predictive performance of these models was evaluated based on three-fold cross-validation via Harrell’s concordance index (c-index), integrated calibration index (ICI), and integrated brier score (IBS). RESULTS: Cox regression and machine learning model had comparable predictive accuracy across three different performance metrics and data-analytic conditions. The estimated c-index values for Cox regression, random survival forests, and extreme gradient boosting were 0.70, 0.69 and 0.70, respectively, when the data were generated from a Cox regression model in a large sample-size conditions. In contrast, the estimated c-index values for these models were 0.64, 0.64, and 0.65 when the data were generated from a random survival forest in a large sample size conditions. Both Cox regression and random survival forest had the lowest ICI values (0.12 for a large sample size and 0.18 for a small sample size) among all the investigated models regardless of sample size and data generating model. CONCLUSION: Cox regression models have comparable, and sometimes better predictive performance, than more complex machine learning models. We recommend that the choice among these models should be guided by important considerations for research hypotheses, model interpretability, and type of data. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-022-01754-y. BioMed Central 2022-11-02 /pmc/articles/PMC9628121/ /pubmed/36324086 http://dx.doi.org/10.1186/s12874-022-01754-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research
Wang, Meng
Greenberg, Matthew
Forkert, Nils D.
Chekouo, Thierry
Afriyie, Gabriel
Ismail, Zahinoor
Smith, Eric E.
Sajobi, Tolulope T.
Dementia risk prediction in individuals with mild cognitive impairment: a comparison of Cox regression and machine learning models
title Dementia risk prediction in individuals with mild cognitive impairment: a comparison of Cox regression and machine learning models
title_full Dementia risk prediction in individuals with mild cognitive impairment: a comparison of Cox regression and machine learning models
title_fullStr Dementia risk prediction in individuals with mild cognitive impairment: a comparison of Cox regression and machine learning models
title_full_unstemmed Dementia risk prediction in individuals with mild cognitive impairment: a comparison of Cox regression and machine learning models
title_short Dementia risk prediction in individuals with mild cognitive impairment: a comparison of Cox regression and machine learning models
title_sort dementia risk prediction in individuals with mild cognitive impairment: a comparison of cox regression and machine learning models
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9628121/
https://www.ncbi.nlm.nih.gov/pubmed/36324086
http://dx.doi.org/10.1186/s12874-022-01754-y
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