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Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction

We propose a relational graph to incorporate clinical similarity between patients while building personalized clinical event predictors with a focus on hospitalized COVID-19 patients. Our graph formation process fuses heterogeneous data, i.e., chest X-rays as node features and non-imaging EHR for ed...

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Autores principales: Tariq, Amara, Tang, Siyi, Sakhi, Hifza, Celi, Leo Anthony, Newsome, Janice M., Rubin, Daniel L., Trivedi, Hari, Gichoy, Judy Wawira, Patel, Bhavik, Banerjee, Imon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9628192/
https://www.ncbi.nlm.nih.gov/pubmed/36324799
http://dx.doi.org/10.1101/2022.10.25.22281469
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author Tariq, Amara
Tang, Siyi
Sakhi, Hifza
Celi, Leo Anthony
Newsome, Janice M.
Rubin, Daniel L.
Trivedi, Hari
Gichoy, Judy Wawira
Patel, Bhavik
Banerjee, Imon
author_facet Tariq, Amara
Tang, Siyi
Sakhi, Hifza
Celi, Leo Anthony
Newsome, Janice M.
Rubin, Daniel L.
Trivedi, Hari
Gichoy, Judy Wawira
Patel, Bhavik
Banerjee, Imon
author_sort Tariq, Amara
collection PubMed
description We propose a relational graph to incorporate clinical similarity between patients while building personalized clinical event predictors with a focus on hospitalized COVID-19 patients. Our graph formation process fuses heterogeneous data, i.e., chest X-rays as node features and non-imaging EHR for edge formation. While node represents a snap-shot in time for a single patient, weighted edge structure encodes complex clinical patterns among patients. While age and gender have been used in the past for patient graph formation, our method incorporates complex clinical history while avoiding manual feature selection. The model learns from the patient’s own data as well as patterns among clinically-similar patients. Our visualization study investigates the effects of ‘neighborhood’ of a node on its predictiveness and showcases the model’s tendency to focus on edge-connected patients with highly suggestive clinical features common with the node. The proposed model generalizes well by allowing edge formation process to adapt to an external cohort.
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spelling pubmed-96281922022-11-03 Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction Tariq, Amara Tang, Siyi Sakhi, Hifza Celi, Leo Anthony Newsome, Janice M. Rubin, Daniel L. Trivedi, Hari Gichoy, Judy Wawira Patel, Bhavik Banerjee, Imon medRxiv Article We propose a relational graph to incorporate clinical similarity between patients while building personalized clinical event predictors with a focus on hospitalized COVID-19 patients. Our graph formation process fuses heterogeneous data, i.e., chest X-rays as node features and non-imaging EHR for edge formation. While node represents a snap-shot in time for a single patient, weighted edge structure encodes complex clinical patterns among patients. While age and gender have been used in the past for patient graph formation, our method incorporates complex clinical history while avoiding manual feature selection. The model learns from the patient’s own data as well as patterns among clinically-similar patients. Our visualization study investigates the effects of ‘neighborhood’ of a node on its predictiveness and showcases the model’s tendency to focus on edge-connected patients with highly suggestive clinical features common with the node. The proposed model generalizes well by allowing edge formation process to adapt to an external cohort. Cold Spring Harbor Laboratory 2022-10-28 /pmc/articles/PMC9628192/ /pubmed/36324799 http://dx.doi.org/10.1101/2022.10.25.22281469 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Tariq, Amara
Tang, Siyi
Sakhi, Hifza
Celi, Leo Anthony
Newsome, Janice M.
Rubin, Daniel L.
Trivedi, Hari
Gichoy, Judy Wawira
Patel, Bhavik
Banerjee, Imon
Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction
title Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction
title_full Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction
title_fullStr Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction
title_full_unstemmed Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction
title_short Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction
title_sort graph-based fusion modeling and explanation for disease trajectory prediction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9628192/
https://www.ncbi.nlm.nih.gov/pubmed/36324799
http://dx.doi.org/10.1101/2022.10.25.22281469
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