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m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma
BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most common and lethal digestive system cancers worldwide. N6-methyladenosine (m6A) modification plays an essential role in diverse critical biological processes and may participate in the development and progression of HCC. METHODS: We downlo...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Hindawi
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9629938/ https://www.ncbi.nlm.nih.gov/pubmed/36339682 http://dx.doi.org/10.1155/2022/2427987 |
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author | Zou, Yan Jiang, Guichun Xie, Yanmin Li, Hui |
author_facet | Zou, Yan Jiang, Guichun Xie, Yanmin Li, Hui |
author_sort | Zou, Yan |
collection | PubMed |
description | BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most common and lethal digestive system cancers worldwide. N6-methyladenosine (m6A) modification plays an essential role in diverse critical biological processes and may participate in the development and progression of HCC. METHODS: We downloaded transcriptome data and clinical data from TCGA as the training set. COX and LASSO screened prognostic m6A genes. ROC and Kaplan-Meier curve analysis evaluated the effectiveness of the model. ICGC and our center data were used as verification sets. RESULTS: We include the “writer (METTL3, METTL14, WTAP, KIAA1429, RBM15, ZC3H13),” the “reader (YTHDC1, YTHDC2, YTHDF1, YTHDF2, HNRNPC),” and the “eraser (FTO, ALKBH5)” in the study. We obtained YTHDF2, YTHDF1, METTL3, and KIAA1429 through differential analysis, survival analysis, and LASSO regression analysis. The prediction model was established based on the expression of these 4 molecules. HCC patients were divided into “high-risk” and “low-risk” groups to compare survival differences. The model suggested a poor prognosis in the validation sets. CONCLUSION: The four-m6A-related-gene combination model was an independent prognostic factor of HCC and could improve the prediction of the prognosis of HCC. |
format | Online Article Text |
id | pubmed-9629938 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-96299382022-11-03 m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma Zou, Yan Jiang, Guichun Xie, Yanmin Li, Hui Comput Math Methods Med Research Article BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most common and lethal digestive system cancers worldwide. N6-methyladenosine (m6A) modification plays an essential role in diverse critical biological processes and may participate in the development and progression of HCC. METHODS: We downloaded transcriptome data and clinical data from TCGA as the training set. COX and LASSO screened prognostic m6A genes. ROC and Kaplan-Meier curve analysis evaluated the effectiveness of the model. ICGC and our center data were used as verification sets. RESULTS: We include the “writer (METTL3, METTL14, WTAP, KIAA1429, RBM15, ZC3H13),” the “reader (YTHDC1, YTHDC2, YTHDF1, YTHDF2, HNRNPC),” and the “eraser (FTO, ALKBH5)” in the study. We obtained YTHDF2, YTHDF1, METTL3, and KIAA1429 through differential analysis, survival analysis, and LASSO regression analysis. The prediction model was established based on the expression of these 4 molecules. HCC patients were divided into “high-risk” and “low-risk” groups to compare survival differences. The model suggested a poor prognosis in the validation sets. CONCLUSION: The four-m6A-related-gene combination model was an independent prognostic factor of HCC and could improve the prediction of the prognosis of HCC. Hindawi 2022-10-26 /pmc/articles/PMC9629938/ /pubmed/36339682 http://dx.doi.org/10.1155/2022/2427987 Text en Copyright © 2022 Yan Zou et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zou, Yan Jiang, Guichun Xie, Yanmin Li, Hui m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma |
title | m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma |
title_full | m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma |
title_fullStr | m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma |
title_full_unstemmed | m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma |
title_short | m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma |
title_sort | m6a-related genes contribute to poor prognosis of hepatocellular carcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9629938/ https://www.ncbi.nlm.nih.gov/pubmed/36339682 http://dx.doi.org/10.1155/2022/2427987 |
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