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m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma

BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most common and lethal digestive system cancers worldwide. N6-methyladenosine (m6A) modification plays an essential role in diverse critical biological processes and may participate in the development and progression of HCC. METHODS: We downlo...

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Autores principales: Zou, Yan, Jiang, Guichun, Xie, Yanmin, Li, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9629938/
https://www.ncbi.nlm.nih.gov/pubmed/36339682
http://dx.doi.org/10.1155/2022/2427987
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author Zou, Yan
Jiang, Guichun
Xie, Yanmin
Li, Hui
author_facet Zou, Yan
Jiang, Guichun
Xie, Yanmin
Li, Hui
author_sort Zou, Yan
collection PubMed
description BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most common and lethal digestive system cancers worldwide. N6-methyladenosine (m6A) modification plays an essential role in diverse critical biological processes and may participate in the development and progression of HCC. METHODS: We downloaded transcriptome data and clinical data from TCGA as the training set. COX and LASSO screened prognostic m6A genes. ROC and Kaplan-Meier curve analysis evaluated the effectiveness of the model. ICGC and our center data were used as verification sets. RESULTS: We include the “writer (METTL3, METTL14, WTAP, KIAA1429, RBM15, ZC3H13),” the “reader (YTHDC1, YTHDC2, YTHDF1, YTHDF2, HNRNPC),” and the “eraser (FTO, ALKBH5)” in the study. We obtained YTHDF2, YTHDF1, METTL3, and KIAA1429 through differential analysis, survival analysis, and LASSO regression analysis. The prediction model was established based on the expression of these 4 molecules. HCC patients were divided into “high-risk” and “low-risk” groups to compare survival differences. The model suggested a poor prognosis in the validation sets. CONCLUSION: The four-m6A-related-gene combination model was an independent prognostic factor of HCC and could improve the prediction of the prognosis of HCC.
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spelling pubmed-96299382022-11-03 m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma Zou, Yan Jiang, Guichun Xie, Yanmin Li, Hui Comput Math Methods Med Research Article BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most common and lethal digestive system cancers worldwide. N6-methyladenosine (m6A) modification plays an essential role in diverse critical biological processes and may participate in the development and progression of HCC. METHODS: We downloaded transcriptome data and clinical data from TCGA as the training set. COX and LASSO screened prognostic m6A genes. ROC and Kaplan-Meier curve analysis evaluated the effectiveness of the model. ICGC and our center data were used as verification sets. RESULTS: We include the “writer (METTL3, METTL14, WTAP, KIAA1429, RBM15, ZC3H13),” the “reader (YTHDC1, YTHDC2, YTHDF1, YTHDF2, HNRNPC),” and the “eraser (FTO, ALKBH5)” in the study. We obtained YTHDF2, YTHDF1, METTL3, and KIAA1429 through differential analysis, survival analysis, and LASSO regression analysis. The prediction model was established based on the expression of these 4 molecules. HCC patients were divided into “high-risk” and “low-risk” groups to compare survival differences. The model suggested a poor prognosis in the validation sets. CONCLUSION: The four-m6A-related-gene combination model was an independent prognostic factor of HCC and could improve the prediction of the prognosis of HCC. Hindawi 2022-10-26 /pmc/articles/PMC9629938/ /pubmed/36339682 http://dx.doi.org/10.1155/2022/2427987 Text en Copyright © 2022 Yan Zou et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zou, Yan
Jiang, Guichun
Xie, Yanmin
Li, Hui
m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma
title m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma
title_full m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma
title_fullStr m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma
title_full_unstemmed m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma
title_short m6A-Related Genes Contribute to Poor Prognosis of Hepatocellular Carcinoma
title_sort m6a-related genes contribute to poor prognosis of hepatocellular carcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9629938/
https://www.ncbi.nlm.nih.gov/pubmed/36339682
http://dx.doi.org/10.1155/2022/2427987
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