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Evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods
Mammalian pulmonary arteries divide multiple times before reaching the vast capillary network of the alveoli. Morphological analyses of the arterial branches can be challenging because more proximal branches are likely biologically distinct from more peripheral parts. Thus, it is useful to group the...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9630218/ https://www.ncbi.nlm.nih.gov/pubmed/35739424 http://dx.doi.org/10.1007/s00418-022-02116-x |
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author | Labode, Jonas Dullin, Christian Wagner, Willi L. Myti, Despoina Morty, Rory E. Mühlfeld, Christian |
author_facet | Labode, Jonas Dullin, Christian Wagner, Willi L. Myti, Despoina Morty, Rory E. Mühlfeld, Christian |
author_sort | Labode, Jonas |
collection | PubMed |
description | Mammalian pulmonary arteries divide multiple times before reaching the vast capillary network of the alveoli. Morphological analyses of the arterial branches can be challenging because more proximal branches are likely biologically distinct from more peripheral parts. Thus, it is useful to group the arterial branches into groups of coherent biology. While the generational approach of dichotomous branching is straightforward, the grouping of arterial branches in the asymmetrically branching monopodial lung is less clear. Several established classification methods return highly dissimilar groupings when employed on the same organ. Here, we established a workflow allowing the quantification of grouping results for the monopodial lung and tested various methods to group the branches of the arterial tree into coherent groups. A mouse lung was imaged by synchrotron x-ray microcomputed tomography, and the arteries were digitally segmented. The arterial tree was divided into its individual segments, morphological properties were assessed from corresponding light microscopic scans, and different grouping methods were employed, such as (fractal) generation or (Strahler) order. The results were ranked by the morphological similarity within and dissimilarity between the resulting groups. Additionally, a method from the mathematical field of cluster analysis was employed for creating a reference classification. In conclusion, there were significant differences in method performance. The Strahler order was significantly superior to the generation system commonly used to classify human lung structure. Furthermore, a clustering approach indicated more precise ways to classify the monopodial lung vasculature exist. |
format | Online Article Text |
id | pubmed-9630218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-96302182022-11-04 Evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods Labode, Jonas Dullin, Christian Wagner, Willi L. Myti, Despoina Morty, Rory E. Mühlfeld, Christian Histochem Cell Biol Original Paper Mammalian pulmonary arteries divide multiple times before reaching the vast capillary network of the alveoli. Morphological analyses of the arterial branches can be challenging because more proximal branches are likely biologically distinct from more peripheral parts. Thus, it is useful to group the arterial branches into groups of coherent biology. While the generational approach of dichotomous branching is straightforward, the grouping of arterial branches in the asymmetrically branching monopodial lung is less clear. Several established classification methods return highly dissimilar groupings when employed on the same organ. Here, we established a workflow allowing the quantification of grouping results for the monopodial lung and tested various methods to group the branches of the arterial tree into coherent groups. A mouse lung was imaged by synchrotron x-ray microcomputed tomography, and the arteries were digitally segmented. The arterial tree was divided into its individual segments, morphological properties were assessed from corresponding light microscopic scans, and different grouping methods were employed, such as (fractal) generation or (Strahler) order. The results were ranked by the morphological similarity within and dissimilarity between the resulting groups. Additionally, a method from the mathematical field of cluster analysis was employed for creating a reference classification. In conclusion, there were significant differences in method performance. The Strahler order was significantly superior to the generation system commonly used to classify human lung structure. Furthermore, a clustering approach indicated more precise ways to classify the monopodial lung vasculature exist. Springer Berlin Heidelberg 2022-06-23 2022 /pmc/articles/PMC9630218/ /pubmed/35739424 http://dx.doi.org/10.1007/s00418-022-02116-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Paper Labode, Jonas Dullin, Christian Wagner, Willi L. Myti, Despoina Morty, Rory E. Mühlfeld, Christian Evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods |
title | Evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods |
title_full | Evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods |
title_fullStr | Evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods |
title_full_unstemmed | Evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods |
title_short | Evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods |
title_sort | evaluation of classifications of the monopodial bronchopulmonary vasculature using clustering methods |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9630218/ https://www.ncbi.nlm.nih.gov/pubmed/35739424 http://dx.doi.org/10.1007/s00418-022-02116-x |
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