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A novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia

Acute myeloid leukemia (AML) is one of the most common hematopoietic malignancies and exhibits a high rate of relapse and unfavorable outcomes. Ferroptosis, a relatively recently described type of cell death, has been reported to be involved in cancer development. However, the prognostic value of fe...

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Autores principales: Zhu, Kai, Lang, Zhichao, Zhan, Yating, Tao, Qiqi, Yu, Zhijie, Chen, Lili, Fan, Congcong, Jin, Yan, Yu, Kang, Zhu, Bihan, Gao, Yuxiang, Wang, Chengchi, Jiang, Songfu, Shi, Yifen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9630338/
https://www.ncbi.nlm.nih.gov/pubmed/36338716
http://dx.doi.org/10.3389/fonc.2022.1023040
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author Zhu, Kai
Lang, Zhichao
Zhan, Yating
Tao, Qiqi
Yu, Zhijie
Chen, Lili
Fan, Congcong
Jin, Yan
Yu, Kang
Zhu, Bihan
Gao, Yuxiang
Wang, Chengchi
Jiang, Songfu
Shi, Yifen
author_facet Zhu, Kai
Lang, Zhichao
Zhan, Yating
Tao, Qiqi
Yu, Zhijie
Chen, Lili
Fan, Congcong
Jin, Yan
Yu, Kang
Zhu, Bihan
Gao, Yuxiang
Wang, Chengchi
Jiang, Songfu
Shi, Yifen
author_sort Zhu, Kai
collection PubMed
description Acute myeloid leukemia (AML) is one of the most common hematopoietic malignancies and exhibits a high rate of relapse and unfavorable outcomes. Ferroptosis, a relatively recently described type of cell death, has been reported to be involved in cancer development. However, the prognostic value of ferroptosis-related genes (FRGs) in AML remains unclear. In this study, we found 54 differentially expressed ferroptosis-related genes (DEFRGs) between AML and normal marrow tissues. 18 of 54 DEFRGs were correlated with overall survival (OS) (P<0.05). Using the least absolute shrinkage and selection operator (LASSO) Cox regression analysis, we selected 10 DEFRGs that were associated with OS to build a prognostic signature. Data from AML patients from the International Cancer Genome Consortium (ICGC) cohort as well as the First Affiliated Hospital of Wenzhou Medical University (FAHWMU) cohort were used for validation. Notably, the prognostic survival analyses of this signature passed with a significant margin, and the riskscore was identified as an independent prognostic marker using Cox regression analyses. Then we used a machine learning method (SHAP) to judge the importance of each feature in this 10-gene signature. Riskscore was shown to have the highest correlation with this 10-gene signature compared with each gene in this signature. Further studies showed that AML was significantly associated with immune cell infiltration. In addition, drug-sensitive analysis showed that 8 drugs may be beneficial for treatment of AML. Finally, the expressions of 10 genes in this signature were verified by real-time quantitative polymerase chain reaction. In conclusion, our study establishes a novel 10-gene prognostic risk signature based on ferroptosis-related genes for AML patients and FRGs may be novel therapeutic targets for AML.
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spelling pubmed-96303382022-11-04 A novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia Zhu, Kai Lang, Zhichao Zhan, Yating Tao, Qiqi Yu, Zhijie Chen, Lili Fan, Congcong Jin, Yan Yu, Kang Zhu, Bihan Gao, Yuxiang Wang, Chengchi Jiang, Songfu Shi, Yifen Front Oncol Oncology Acute myeloid leukemia (AML) is one of the most common hematopoietic malignancies and exhibits a high rate of relapse and unfavorable outcomes. Ferroptosis, a relatively recently described type of cell death, has been reported to be involved in cancer development. However, the prognostic value of ferroptosis-related genes (FRGs) in AML remains unclear. In this study, we found 54 differentially expressed ferroptosis-related genes (DEFRGs) between AML and normal marrow tissues. 18 of 54 DEFRGs were correlated with overall survival (OS) (P<0.05). Using the least absolute shrinkage and selection operator (LASSO) Cox regression analysis, we selected 10 DEFRGs that were associated with OS to build a prognostic signature. Data from AML patients from the International Cancer Genome Consortium (ICGC) cohort as well as the First Affiliated Hospital of Wenzhou Medical University (FAHWMU) cohort were used for validation. Notably, the prognostic survival analyses of this signature passed with a significant margin, and the riskscore was identified as an independent prognostic marker using Cox regression analyses. Then we used a machine learning method (SHAP) to judge the importance of each feature in this 10-gene signature. Riskscore was shown to have the highest correlation with this 10-gene signature compared with each gene in this signature. Further studies showed that AML was significantly associated with immune cell infiltration. In addition, drug-sensitive analysis showed that 8 drugs may be beneficial for treatment of AML. Finally, the expressions of 10 genes in this signature were verified by real-time quantitative polymerase chain reaction. In conclusion, our study establishes a novel 10-gene prognostic risk signature based on ferroptosis-related genes for AML patients and FRGs may be novel therapeutic targets for AML. Frontiers Media S.A. 2022-10-20 /pmc/articles/PMC9630338/ /pubmed/36338716 http://dx.doi.org/10.3389/fonc.2022.1023040 Text en Copyright © 2022 Zhu, Lang, Zhan, Tao, Yu, Chen, Fan, Jin, Yu, Zhu, Gao, Wang, Jiang and Shi https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Zhu, Kai
Lang, Zhichao
Zhan, Yating
Tao, Qiqi
Yu, Zhijie
Chen, Lili
Fan, Congcong
Jin, Yan
Yu, Kang
Zhu, Bihan
Gao, Yuxiang
Wang, Chengchi
Jiang, Songfu
Shi, Yifen
A novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia
title A novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia
title_full A novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia
title_fullStr A novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia
title_full_unstemmed A novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia
title_short A novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia
title_sort novel 10-gene ferroptosis-related prognostic signature in acute myeloid leukemia
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9630338/
https://www.ncbi.nlm.nih.gov/pubmed/36338716
http://dx.doi.org/10.3389/fonc.2022.1023040
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