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Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer
Breast cancer is a heterogeneous disease whose subtypes represent different histological origins, prognoses, and therapeutic sensitivity. But there remains a strong need for more specific biomarkers and broader alternatives for personalized treatment. Our study classified breast cancer samples from...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9630632/ https://www.ncbi.nlm.nih.gov/pubmed/36338982 http://dx.doi.org/10.3389/fgene.2022.960567 |
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author | Gao, Shengnan Wu, Xinjie Lou, Xiaoying Cui, Wei |
author_facet | Gao, Shengnan Wu, Xinjie Lou, Xiaoying Cui, Wei |
author_sort | Gao, Shengnan |
collection | PubMed |
description | Breast cancer is a heterogeneous disease whose subtypes represent different histological origins, prognoses, and therapeutic sensitivity. But there remains a strong need for more specific biomarkers and broader alternatives for personalized treatment. Our study classified breast cancer samples from The Cancer Genome Atlas (TCGA) into three groups based on glycosylation-associated genes and then identified differentially expressed genes under different glycosylation patterns to construct a prognostic model. The final prognostic model containing 23 key molecules achieved exciting performance both in the TCGA training set and testing set GSE42568 and GSE58812. The risk score also showed a significant difference in predicting overall clinical survival and immune infiltration analysis. This work helped us to understand the heterogeneity of breast cancer from another perspective and indicated that the identification of risk scores based on glycosylation patterns has potential clinical implications and immune-related value for breast cancer. |
format | Online Article Text |
id | pubmed-9630632 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96306322022-11-04 Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer Gao, Shengnan Wu, Xinjie Lou, Xiaoying Cui, Wei Front Genet Genetics Breast cancer is a heterogeneous disease whose subtypes represent different histological origins, prognoses, and therapeutic sensitivity. But there remains a strong need for more specific biomarkers and broader alternatives for personalized treatment. Our study classified breast cancer samples from The Cancer Genome Atlas (TCGA) into three groups based on glycosylation-associated genes and then identified differentially expressed genes under different glycosylation patterns to construct a prognostic model. The final prognostic model containing 23 key molecules achieved exciting performance both in the TCGA training set and testing set GSE42568 and GSE58812. The risk score also showed a significant difference in predicting overall clinical survival and immune infiltration analysis. This work helped us to understand the heterogeneity of breast cancer from another perspective and indicated that the identification of risk scores based on glycosylation patterns has potential clinical implications and immune-related value for breast cancer. Frontiers Media S.A. 2022-10-20 /pmc/articles/PMC9630632/ /pubmed/36338982 http://dx.doi.org/10.3389/fgene.2022.960567 Text en Copyright © 2022 Gao, Wu, Lou and Cui. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Gao, Shengnan Wu, Xinjie Lou, Xiaoying Cui, Wei Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer |
title | Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer |
title_full | Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer |
title_fullStr | Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer |
title_full_unstemmed | Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer |
title_short | Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer |
title_sort | identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9630632/ https://www.ncbi.nlm.nih.gov/pubmed/36338982 http://dx.doi.org/10.3389/fgene.2022.960567 |
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