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Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer

Breast cancer is a heterogeneous disease whose subtypes represent different histological origins, prognoses, and therapeutic sensitivity. But there remains a strong need for more specific biomarkers and broader alternatives for personalized treatment. Our study classified breast cancer samples from...

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Autores principales: Gao, Shengnan, Wu, Xinjie, Lou, Xiaoying, Cui, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9630632/
https://www.ncbi.nlm.nih.gov/pubmed/36338982
http://dx.doi.org/10.3389/fgene.2022.960567
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author Gao, Shengnan
Wu, Xinjie
Lou, Xiaoying
Cui, Wei
author_facet Gao, Shengnan
Wu, Xinjie
Lou, Xiaoying
Cui, Wei
author_sort Gao, Shengnan
collection PubMed
description Breast cancer is a heterogeneous disease whose subtypes represent different histological origins, prognoses, and therapeutic sensitivity. But there remains a strong need for more specific biomarkers and broader alternatives for personalized treatment. Our study classified breast cancer samples from The Cancer Genome Atlas (TCGA) into three groups based on glycosylation-associated genes and then identified differentially expressed genes under different glycosylation patterns to construct a prognostic model. The final prognostic model containing 23 key molecules achieved exciting performance both in the TCGA training set and testing set GSE42568 and GSE58812. The risk score also showed a significant difference in predicting overall clinical survival and immune infiltration analysis. This work helped us to understand the heterogeneity of breast cancer from another perspective and indicated that the identification of risk scores based on glycosylation patterns has potential clinical implications and immune-related value for breast cancer.
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spelling pubmed-96306322022-11-04 Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer Gao, Shengnan Wu, Xinjie Lou, Xiaoying Cui, Wei Front Genet Genetics Breast cancer is a heterogeneous disease whose subtypes represent different histological origins, prognoses, and therapeutic sensitivity. But there remains a strong need for more specific biomarkers and broader alternatives for personalized treatment. Our study classified breast cancer samples from The Cancer Genome Atlas (TCGA) into three groups based on glycosylation-associated genes and then identified differentially expressed genes under different glycosylation patterns to construct a prognostic model. The final prognostic model containing 23 key molecules achieved exciting performance both in the TCGA training set and testing set GSE42568 and GSE58812. The risk score also showed a significant difference in predicting overall clinical survival and immune infiltration analysis. This work helped us to understand the heterogeneity of breast cancer from another perspective and indicated that the identification of risk scores based on glycosylation patterns has potential clinical implications and immune-related value for breast cancer. Frontiers Media S.A. 2022-10-20 /pmc/articles/PMC9630632/ /pubmed/36338982 http://dx.doi.org/10.3389/fgene.2022.960567 Text en Copyright © 2022 Gao, Wu, Lou and Cui. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Gao, Shengnan
Wu, Xinjie
Lou, Xiaoying
Cui, Wei
Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer
title Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer
title_full Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer
title_fullStr Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer
title_full_unstemmed Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer
title_short Identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer
title_sort identification of a prognostic risk-scoring model and risk signatures based on glycosylation-associated cluster in breast cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9630632/
https://www.ncbi.nlm.nih.gov/pubmed/36338982
http://dx.doi.org/10.3389/fgene.2022.960567
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