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Bioinformatics Analysis and Experimental Identification of Immune-Related Genes and Immune Cells in the Progression of Retinoblastoma

PURPOSE: Retinoblastoma (RB) is the most common type of aggressive intraocular malignancy in children. The alteration of immunity during RB progression and invasion has not yet been well defined. This study investigated significantly altered immune-associated genes and cells related to RB invasion....

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Autores principales: Chen, Shuilian, Chen, Xi, Zhang, Ping, Chen, Shuxia, Wang, Xiao, Luo, Qian, Cui, Zedu, Huang, Yuke, Wan, Linxi, Hou, Xiangtao, Yao, Huan, Liu, Xuan, He, Anqi, Jiang, Zihua, Qiu, Jin, Li, Yan, Yu, Keming, Zhuang, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Association for Research in Vision and Ophthalmology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9631497/
https://www.ncbi.nlm.nih.gov/pubmed/36315123
http://dx.doi.org/10.1167/iovs.63.11.28
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author Chen, Shuilian
Chen, Xi
Zhang, Ping
Chen, Shuxia
Wang, Xiao
Luo, Qian
Cui, Zedu
Huang, Yuke
Wan, Linxi
Hou, Xiangtao
Yao, Huan
Liu, Xuan
He, Anqi
Jiang, Zihua
Qiu, Jin
Li, Yan
Yu, Keming
Zhuang, Jing
author_facet Chen, Shuilian
Chen, Xi
Zhang, Ping
Chen, Shuxia
Wang, Xiao
Luo, Qian
Cui, Zedu
Huang, Yuke
Wan, Linxi
Hou, Xiangtao
Yao, Huan
Liu, Xuan
He, Anqi
Jiang, Zihua
Qiu, Jin
Li, Yan
Yu, Keming
Zhuang, Jing
author_sort Chen, Shuilian
collection PubMed
description PURPOSE: Retinoblastoma (RB) is the most common type of aggressive intraocular malignancy in children. The alteration of immunity during RB progression and invasion has not yet been well defined. This study investigated significantly altered immune-associated genes and cells related to RB invasion. METHODS: The differentially expressed immune-related genes (IRGs) in noninvasive RB and invasive RB were identified by analysis of two microarray datasets (GSE97508 and GSE110811). Hub IRGs were further identified by real time PCR. The single-sample gene set enrichment analysis algorithm and Pearson correlation analysis were used to define immune cell infiltration and the relationships between hub IRGs and immune cells. Cell viability and migration were evaluated by CCK-8 and Transwell assays. A xenograft mouse model was used to verify the relationship between Src homology 3 (SH3) domain GRB2‐like 2 (SH3GL2) expression and myeloid-derived suppressor cells (MDSCs). RESULTS: Eight upregulated genes and six downregulated IRGs were identified in invasive RB. Seven IRGs were confirmed by real-time PCR. Moreover, the proportions of MDSCs were higher in invasive RB tissues than in noninvasive RB tissues. Furthermore, correlation analysis of altered immune genes and cells suggested that SH3GL2, Langerhans cell protein 1 (LCP1) and transmembrane immune signaling adaptor TYROBP have strong connections with MDSCs. Specifically, decreased SH3GL2 expression promoted the migration of RB cells in vitro, increased the tumor size and weight, and increased the numbers of MDSCs in the tumor and spleen in vivo. CONCLUSIONS: This study indicated that SH3GL2 and MDSCs play a critical role in RB progression and invasion and provide candidate targets for the treatment of RB.
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spelling pubmed-96314972022-11-04 Bioinformatics Analysis and Experimental Identification of Immune-Related Genes and Immune Cells in the Progression of Retinoblastoma Chen, Shuilian Chen, Xi Zhang, Ping Chen, Shuxia Wang, Xiao Luo, Qian Cui, Zedu Huang, Yuke Wan, Linxi Hou, Xiangtao Yao, Huan Liu, Xuan He, Anqi Jiang, Zihua Qiu, Jin Li, Yan Yu, Keming Zhuang, Jing Invest Ophthalmol Vis Sci Retina PURPOSE: Retinoblastoma (RB) is the most common type of aggressive intraocular malignancy in children. The alteration of immunity during RB progression and invasion has not yet been well defined. This study investigated significantly altered immune-associated genes and cells related to RB invasion. METHODS: The differentially expressed immune-related genes (IRGs) in noninvasive RB and invasive RB were identified by analysis of two microarray datasets (GSE97508 and GSE110811). Hub IRGs were further identified by real time PCR. The single-sample gene set enrichment analysis algorithm and Pearson correlation analysis were used to define immune cell infiltration and the relationships between hub IRGs and immune cells. Cell viability and migration were evaluated by CCK-8 and Transwell assays. A xenograft mouse model was used to verify the relationship between Src homology 3 (SH3) domain GRB2‐like 2 (SH3GL2) expression and myeloid-derived suppressor cells (MDSCs). RESULTS: Eight upregulated genes and six downregulated IRGs were identified in invasive RB. Seven IRGs were confirmed by real-time PCR. Moreover, the proportions of MDSCs were higher in invasive RB tissues than in noninvasive RB tissues. Furthermore, correlation analysis of altered immune genes and cells suggested that SH3GL2, Langerhans cell protein 1 (LCP1) and transmembrane immune signaling adaptor TYROBP have strong connections with MDSCs. Specifically, decreased SH3GL2 expression promoted the migration of RB cells in vitro, increased the tumor size and weight, and increased the numbers of MDSCs in the tumor and spleen in vivo. CONCLUSIONS: This study indicated that SH3GL2 and MDSCs play a critical role in RB progression and invasion and provide candidate targets for the treatment of RB. The Association for Research in Vision and Ophthalmology 2022-10-31 /pmc/articles/PMC9631497/ /pubmed/36315123 http://dx.doi.org/10.1167/iovs.63.11.28 Text en Copyright 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
spellingShingle Retina
Chen, Shuilian
Chen, Xi
Zhang, Ping
Chen, Shuxia
Wang, Xiao
Luo, Qian
Cui, Zedu
Huang, Yuke
Wan, Linxi
Hou, Xiangtao
Yao, Huan
Liu, Xuan
He, Anqi
Jiang, Zihua
Qiu, Jin
Li, Yan
Yu, Keming
Zhuang, Jing
Bioinformatics Analysis and Experimental Identification of Immune-Related Genes and Immune Cells in the Progression of Retinoblastoma
title Bioinformatics Analysis and Experimental Identification of Immune-Related Genes and Immune Cells in the Progression of Retinoblastoma
title_full Bioinformatics Analysis and Experimental Identification of Immune-Related Genes and Immune Cells in the Progression of Retinoblastoma
title_fullStr Bioinformatics Analysis and Experimental Identification of Immune-Related Genes and Immune Cells in the Progression of Retinoblastoma
title_full_unstemmed Bioinformatics Analysis and Experimental Identification of Immune-Related Genes and Immune Cells in the Progression of Retinoblastoma
title_short Bioinformatics Analysis and Experimental Identification of Immune-Related Genes and Immune Cells in the Progression of Retinoblastoma
title_sort bioinformatics analysis and experimental identification of immune-related genes and immune cells in the progression of retinoblastoma
topic Retina
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9631497/
https://www.ncbi.nlm.nih.gov/pubmed/36315123
http://dx.doi.org/10.1167/iovs.63.11.28
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