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Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)
Mosses comprise one of three lineages forming a sister group to extant vascular plants. Having emerged from an early split in the diversification of embryophytes, mosses may offer complementary insights into the evolution of traits following the transition to, and colonization of, land. Here, we rep...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
GigaScience Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9631980/ https://www.ncbi.nlm.nih.gov/pubmed/36824590 http://dx.doi.org/10.46471/gigabyte.8 |
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author | Yu, Jin Li, Linzhou Wang, Sibo Dong, Shanshan Chen, Ziqiang Patel, Nikisha Goffinet, Bernard Chen, Hongfeng Liu, Huan Liu, Yang |
author_facet | Yu, Jin Li, Linzhou Wang, Sibo Dong, Shanshan Chen, Ziqiang Patel, Nikisha Goffinet, Bernard Chen, Hongfeng Liu, Huan Liu, Yang |
author_sort | Yu, Jin |
collection | PubMed |
description | Mosses comprise one of three lineages forming a sister group to extant vascular plants. Having emerged from an early split in the diversification of embryophytes, mosses may offer complementary insights into the evolution of traits following the transition to, and colonization of, land. Here, we report the draft nuclear genome of Fontinalis antipyretica (Fontinalaceae, Hypnales), a charismatic aquatic moss that is widespread in temperate regions of the Northern Hemisphere. We sequenced and de novo-assembled its genome using the 10X Genomics method. The genome comprises 385.2 Mbp, with a scaffold N50 of 45.8 Kbp. The assembly captured 87.2% of the 430 genes in the BUSCO Viridiplantae odb10 dataset. The newly generated F. antipyretica genome is the third moss genome, and the second seedless aquatic plant genome, to be sequenced and assembled to date. |
format | Online Article Text |
id | pubmed-9631980 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | GigaScience Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-96319802023-02-22 Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) Yu, Jin Li, Linzhou Wang, Sibo Dong, Shanshan Chen, Ziqiang Patel, Nikisha Goffinet, Bernard Chen, Hongfeng Liu, Huan Liu, Yang GigaByte Data Release Mosses comprise one of three lineages forming a sister group to extant vascular plants. Having emerged from an early split in the diversification of embryophytes, mosses may offer complementary insights into the evolution of traits following the transition to, and colonization of, land. Here, we report the draft nuclear genome of Fontinalis antipyretica (Fontinalaceae, Hypnales), a charismatic aquatic moss that is widespread in temperate regions of the Northern Hemisphere. We sequenced and de novo-assembled its genome using the 10X Genomics method. The genome comprises 385.2 Mbp, with a scaffold N50 of 45.8 Kbp. The assembly captured 87.2% of the 430 genes in the BUSCO Viridiplantae odb10 dataset. The newly generated F. antipyretica genome is the third moss genome, and the second seedless aquatic plant genome, to be sequenced and assembled to date. GigaScience Press 2020-11-16 /pmc/articles/PMC9631980/ /pubmed/36824590 http://dx.doi.org/10.46471/gigabyte.8 Text en © The Author(s) 2020. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Release Yu, Jin Li, Linzhou Wang, Sibo Dong, Shanshan Chen, Ziqiang Patel, Nikisha Goffinet, Bernard Chen, Hongfeng Liu, Huan Liu, Yang Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
title | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
title_full | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
title_fullStr | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
title_full_unstemmed | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
title_short | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
title_sort | draft genome of the aquatic moss fontinalis antipyretica (fontinalaceae, bryophyta) |
topic | Data Release |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9631980/ https://www.ncbi.nlm.nih.gov/pubmed/36824590 http://dx.doi.org/10.46471/gigabyte.8 |
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