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Antibiotic Resistomes and Microbiomes in the Surface Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic Activities
[Image: see text] Water and sanitation are important factors in the emergence of antimicrobial resistance in low- and middle-income countries. Drug residues, metals, and various wastes foster the spread of antibiotic resistance genes (ARGs) with the help of mobile genetic elements (MGEs), and theref...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9631996/ https://www.ncbi.nlm.nih.gov/pubmed/35775832 http://dx.doi.org/10.1021/acs.est.2c01570 |
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author | Muurinen, Johanna Muziasari, Windi I. Hultman, Jenni Pärnänen, Katariina Narita, Vanny Lyra, Christina Fadlillah, Lintang N. Rizki, Ludhang P. Nurmi, William Tiedje, James M. Dwiprahasto, Iwan Hadi, Pramono Virta, Marko P. J. |
author_facet | Muurinen, Johanna Muziasari, Windi I. Hultman, Jenni Pärnänen, Katariina Narita, Vanny Lyra, Christina Fadlillah, Lintang N. Rizki, Ludhang P. Nurmi, William Tiedje, James M. Dwiprahasto, Iwan Hadi, Pramono Virta, Marko P. J. |
author_sort | Muurinen, Johanna |
collection | PubMed |
description | [Image: see text] Water and sanitation are important factors in the emergence of antimicrobial resistance in low- and middle-income countries. Drug residues, metals, and various wastes foster the spread of antibiotic resistance genes (ARGs) with the help of mobile genetic elements (MGEs), and therefore, rivers receiving contaminants and effluents from multiple sources are of special interest. We followed both the microbiome and resistome of the Code River in Indonesia from its pristine origin at the Merapi volcano through rural and then city areas to the coast of the Indian Ocean. We used a SmartChip quantitative PCR with 382 primer pairs for profiling the resistome and MGEs and 16S rRNA gene amplicon sequencing to analyze the bacterial communities. The community structure explained the resistome composition in rural areas, while the city sampling sites had lower bacterial diversity and more ARGs, which correlated with MGEs, suggesting increased mobility potential in response to pressures from human activities. Importantly, the vast majority of ARGs and MGEs were no longer detectable in marine waters at the ocean entrance. Our work provides information on the impact of different influents on river health as well as sheds light on how land use contributes to the river resistome and microbiome. |
format | Online Article Text |
id | pubmed-9631996 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-96319962022-11-04 Antibiotic Resistomes and Microbiomes in the Surface Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic Activities Muurinen, Johanna Muziasari, Windi I. Hultman, Jenni Pärnänen, Katariina Narita, Vanny Lyra, Christina Fadlillah, Lintang N. Rizki, Ludhang P. Nurmi, William Tiedje, James M. Dwiprahasto, Iwan Hadi, Pramono Virta, Marko P. J. Environ Sci Technol [Image: see text] Water and sanitation are important factors in the emergence of antimicrobial resistance in low- and middle-income countries. Drug residues, metals, and various wastes foster the spread of antibiotic resistance genes (ARGs) with the help of mobile genetic elements (MGEs), and therefore, rivers receiving contaminants and effluents from multiple sources are of special interest. We followed both the microbiome and resistome of the Code River in Indonesia from its pristine origin at the Merapi volcano through rural and then city areas to the coast of the Indian Ocean. We used a SmartChip quantitative PCR with 382 primer pairs for profiling the resistome and MGEs and 16S rRNA gene amplicon sequencing to analyze the bacterial communities. The community structure explained the resistome composition in rural areas, while the city sampling sites had lower bacterial diversity and more ARGs, which correlated with MGEs, suggesting increased mobility potential in response to pressures from human activities. Importantly, the vast majority of ARGs and MGEs were no longer detectable in marine waters at the ocean entrance. Our work provides information on the impact of different influents on river health as well as sheds light on how land use contributes to the river resistome and microbiome. American Chemical Society 2022-07-01 2022-11-01 /pmc/articles/PMC9631996/ /pubmed/35775832 http://dx.doi.org/10.1021/acs.est.2c01570 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Muurinen, Johanna Muziasari, Windi I. Hultman, Jenni Pärnänen, Katariina Narita, Vanny Lyra, Christina Fadlillah, Lintang N. Rizki, Ludhang P. Nurmi, William Tiedje, James M. Dwiprahasto, Iwan Hadi, Pramono Virta, Marko P. J. Antibiotic Resistomes and Microbiomes in the Surface Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic Activities |
title | Antibiotic
Resistomes and Microbiomes in the Surface
Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic
Activities |
title_full | Antibiotic
Resistomes and Microbiomes in the Surface
Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic
Activities |
title_fullStr | Antibiotic
Resistomes and Microbiomes in the Surface
Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic
Activities |
title_full_unstemmed | Antibiotic
Resistomes and Microbiomes in the Surface
Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic
Activities |
title_short | Antibiotic
Resistomes and Microbiomes in the Surface
Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic
Activities |
title_sort | antibiotic
resistomes and microbiomes in the surface
water along the code river in indonesia reflect drainage basin anthropogenic
activities |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9631996/ https://www.ncbi.nlm.nih.gov/pubmed/35775832 http://dx.doi.org/10.1021/acs.est.2c01570 |
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