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A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)

Amphibian genomes are usually challenging to assemble due to their large genome size and high repeat content. The Limnodynastidae is a family of frogs native to Australia, Tasmania and New Guinea. As an anuran lineage that successfully diversified on the Australian continent, it represents an import...

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Autores principales: Li, Qiye, Guo, Qunfei, Zhou, Yang, Tan, Huishuang, Bertozzi, Terry, Zhu, Yuanzhen, Li, Ji, Donnellan, Stephen, Zhang, Guojie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: GigaScience Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9632003/
https://www.ncbi.nlm.nih.gov/pubmed/36824594
http://dx.doi.org/10.46471/gigabyte.2
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author Li, Qiye
Guo, Qunfei
Zhou, Yang
Tan, Huishuang
Bertozzi, Terry
Zhu, Yuanzhen
Li, Ji
Donnellan, Stephen
Zhang, Guojie
author_facet Li, Qiye
Guo, Qunfei
Zhou, Yang
Tan, Huishuang
Bertozzi, Terry
Zhu, Yuanzhen
Li, Ji
Donnellan, Stephen
Zhang, Guojie
author_sort Li, Qiye
collection PubMed
description Amphibian genomes are usually challenging to assemble due to their large genome size and high repeat content. The Limnodynastidae is a family of frogs native to Australia, Tasmania and New Guinea. As an anuran lineage that successfully diversified on the Australian continent, it represents an important lineage in the amphibian tree of life but lacks reference genomes. Here we sequenced and annotated the genome of the eastern banjo frog Limnodynastes dumerilii dumerilii to fill this gap. The total length of the genome assembly is 2.38 Gb with a scaffold N50 of 285.9 kb. We identified 1.21 Gb of non-redundant sequences as repetitive elements and annotated 24,548 protein-coding genes in the assembly. BUSCO assessment indicated that more than 94% of the expected vertebrate genes were present in the genome assembly and the gene set. We anticipate that this annotated genome assembly will advance the future study of anuran phylogeny and amphibian genome evolution.
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spelling pubmed-96320032023-02-22 A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae) Li, Qiye Guo, Qunfei Zhou, Yang Tan, Huishuang Bertozzi, Terry Zhu, Yuanzhen Li, Ji Donnellan, Stephen Zhang, Guojie GigaByte Data Release Amphibian genomes are usually challenging to assemble due to their large genome size and high repeat content. The Limnodynastidae is a family of frogs native to Australia, Tasmania and New Guinea. As an anuran lineage that successfully diversified on the Australian continent, it represents an important lineage in the amphibian tree of life but lacks reference genomes. Here we sequenced and annotated the genome of the eastern banjo frog Limnodynastes dumerilii dumerilii to fill this gap. The total length of the genome assembly is 2.38 Gb with a scaffold N50 of 285.9 kb. We identified 1.21 Gb of non-redundant sequences as repetitive elements and annotated 24,548 protein-coding genes in the assembly. BUSCO assessment indicated that more than 94% of the expected vertebrate genes were present in the genome assembly and the gene set. We anticipate that this annotated genome assembly will advance the future study of anuran phylogeny and amphibian genome evolution. GigaScience Press 2020-07-01 /pmc/articles/PMC9632003/ /pubmed/36824594 http://dx.doi.org/10.46471/gigabyte.2 Text en © The Author(s) 2020. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Release
Li, Qiye
Guo, Qunfei
Zhou, Yang
Tan, Huishuang
Bertozzi, Terry
Zhu, Yuanzhen
Li, Ji
Donnellan, Stephen
Zhang, Guojie
A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_full A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_fullStr A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_full_unstemmed A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_short A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_sort draft genome assembly of the eastern banjo frog limnodynastes dumerilii dumerilii (anura: limnodynastidae)
topic Data Release
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9632003/
https://www.ncbi.nlm.nih.gov/pubmed/36824594
http://dx.doi.org/10.46471/gigabyte.2
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